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Projects in Awesome Lists by filipinascimento
A curated list of projects in awesome lists by filipinascimento .
https://github.com/filipinascimento/helios-web
A web-based framework to visualize dynamic networks in real-time.
3d complex-networks network visualization
Last synced: 24 Nov 2024
https://github.com/filipinascimento/openalexnet
OpenAlex Networks is a helper library to process and obtain data from the OpenAlex dataset via API. It also provides functionality to generate citation and coauthorship networks from queries.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/openalex-raw
Tools to process OpenAlex raw snapshot files
Last synced: 08 Nov 2024
https://github.com/filipinascimento/rmodularity
Small utility to calculate the robustness modularity, information modularity and modularity difference.
complex-networks modularity networks robustness-modularity sbm
Last synced: 08 Nov 2024
https://github.com/filipinascimento/dbgz
Small utility to read and write data from/to dbgz
Last synced: 08 Nov 2024
https://github.com/filipinascimento/workshop-netviz
This repository contains the files and links to be used in the IUNI Workshop Hands-on : An Introduction to Network Visualization. https://iuni.iu.edu/news/event/79
Last synced: 08 Nov 2024
https://github.com/filipinascimento/cvsymmetry
Software to calculate the concentric symmetries of complex networks as described in http://arxiv.org/abs/1407.0224
Last synced: 08 Nov 2024
https://github.com/filipinascimento/cvaccessibility
Software to calculate the outwards accessibility measurement of nodes in complex networks. Check http://arxiv.org/abs/1101.5379v3 and http://arxiv.org/abs/0802.3665 .
Last synced: 08 Nov 2024
https://github.com/filipinascimento/tpsimilarity
TP Similarity is a Python package designed to compute Transition Probability (TP) similarities between nodes in a network. This package provides various methods to estimate these similarities, including exact computation, estimated methods, and node2vec-based cosine similarity.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/teleconnectionsgranger
Notebook to find teleconnections in Anomalies in Precipitation and Temperature cross the globe using lagged correlation or Granger causality
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-visualization
This app generates simple 2D static visualizations for networks by using a force-directed algorithm. The current implementation uses the Large Graph Layout (LGL) algorithm.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/xnet
Small python package to read .xnet (compleX NETwork format) files used in my other scripts.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/wos
Simple WOS aggregator to process WOS JSON files
Last synced: 08 Nov 2024
https://github.com/filipinascimento/cvrandomwalks
Fast library to obtain sentences based on random walks from networks for use in word2vec and other embedding techniques.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-timeseries2network
Calculates a similarity matrix (such as correlation, covariance, etc) from time series and convert it to a network datatype (JGFZ) so it can be used in the network pipeline.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-preprocess
App to preprocess connectivity/similarity matrices (conmat) and generate a filtered version of the network, which can be directed or undirected, weighted or unweighted.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-measurements
App to calculate several basic statistics for networks and their respective null model distributions.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/datascience
Data Science Course materials
Last synced: 08 Nov 2024
https://github.com/filipinascimento/wosraw
Collection of utilities to process raw XML data from the Web of Science.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/fury-docker
Docker Image to run fury offscreen
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-report
App to generate reports from networks. This includes network properties, node attributes and their respective distributions.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/minervaviz
Visualizations of MINERVA projects
Last synced: 08 Nov 2024
https://github.com/filipinascimento/cxnetworks-docker
Network science docker image with basic libraries. Currently being used to run brainlife network science apps.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-template
Template app to build new network neuroscience apps for brainlife
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-nullmodel
Generates an esemble of networks according to null models that try to reproduce the data. Erdos reyni (random), Barabási-Albert and Configuration model are implemented
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-template-matlab
Example template for network analyses using matlab inside brainlife.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-network-communities
App to obtain the community structure of networks by using the Louvain or Infomap methods. All the Louvain quality functions work for networks with negative weights.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/jgf
This package implements export and import functions for the JSON Graph Format (gZipped) `JGF(Z)` (https://jsongraphformat.info). Supported input formats/libraries are `networkx`, `igraph`, `numpy` matrices and `JXNF` files. All network, node and edges attributes are saved as well.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/metabonet
Interactive visualization for metabolite networks. Under development.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bl-conmat2network
Simple brainlife app to create a network from a conmat matrix.
Last synced: 08 Nov 2024
https://github.com/filipinascimento/bioknn
Simple pipeline to create KNN networks from single-cell gene expression (counts data).
Last synced: 08 Nov 2024