Projects in Awesome Lists by hubmapconsortium
A curated list of projects in awesome lists by hubmapconsortium .
https://github.com/hubmapconsortium/ccf-validation-tools
HRA ASCT+B Validation Reports
human-reference-atlas ot2od030545
Last synced: 10 Apr 2026
https://github.com/hubmapconsortium/ingest-pipeline
Data ingest pipeline(s) for QA/metadata etl/post-processing
Last synced: 28 Apr 2026
https://github.com/hubmapconsortium/hra-kg
Human Reference Atlas Knowledge Graph
human-reference-atlas ot2od030545
Last synced: 13 Mar 2026
https://github.com/hubmapconsortium/entity-api
A set of web service calls to return information about HuBMAP entities
Last synced: 29 Jan 2026
https://github.com/hubmapconsortium/ccf-ontology
CCF Ontology v2.x
human-reference-atlas ot2od030545
Last synced: 15 Mar 2026
https://github.com/hubmapconsortium/search-api
HuBMAP search service and associated pieces to create an index
Last synced: 21 Jan 2026
https://github.com/hubmapconsortium/asct-b-generator
CLI to convert a simple CSV file into ASCT+B format
Last synced: 22 May 2026
https://github.com/hubmapconsortium/hra-registrations
Manually curated HRA Dataset Graphs
human-reference-atlas ot2od030545
Last synced: 26 May 2026
https://github.com/hubmapconsortium/spreadsheet-validator-ui
The user interface module of the IEC Spreadsheet Validator tool
Last synced: 26 May 2026
https://github.com/hubmapconsortium/hra-glb-mesh-collisions
hra-glb-mesh-collisions: Extract mesh-mesh collision information in a GLB file
human-reference-atlas ot2od030545
Last synced: 27 May 2026
https://github.com/hubmapconsortium/py-hubmapbags
Python package used to build the submission for the CFDE Search Portal
Last synced: 26 May 2026
https://github.com/hubmapconsortium/reharmonize-legacy-metadata
Resources and outputs for aligning legacy metadata with new schema standards through mappings, patches and glossaries
Last synced: 13 Mar 2026
https://github.com/hubmapconsortium/hubmap-api-py-client
Python client for the Cells API
Last synced: 27 May 2026
https://github.com/hubmapconsortium/hra-ref-organ-validation
hra-ref-organ-validation: Code to validate part-of relationships implicit in HRA 3D Reference Organs
Last synced: 26 May 2026
https://github.com/hubmapconsortium/hra-millitome-generator
OpenScad code for building HRA Millitomes
Last synced: 15 Mar 2026
https://github.com/hubmapconsortium/spatial2ccf
A Python tool to convert RUI objects to CCF Spatial Ontology (CCF-SPO)
Last synced: 27 May 2026
https://github.com/hubmapconsortium/antibodies-tsv-util
Package for cross-pipeline usage of `antibodies.tsv` contents
Last synced: 28 May 2026
https://github.com/hubmapconsortium/hra-do-server
HRA Digital Objects Server
Last synced: 13 Mar 2026
https://github.com/hubmapconsortium/ccf-3d-reference-object-library
HRA 3D Reference Object Library (Source)
Last synced: 13 Mar 2026
https://github.com/hubmapconsortium/ccf-rdf-writer
CCF RDF Writer
human-reference-atlas ot2od030545
Last synced: 01 Apr 2026
https://github.com/hubmapconsortium/gateway
Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway
docker docker-compose flask nginx ot2od030545 python3 uwsgi
Last synced: 04 Mar 2026
https://github.com/hubmapconsortium/mudata-validator
Python package to validate mudata objects.
Last synced: 30 Dec 2025
https://github.com/hubmapconsortium/hra-data-dashboard
HuBMAP HRA Data Dashboard
Last synced: 24 May 2026
https://github.com/hubmapconsortium/cross-dataset-common
Python package containing tools used across cross-dataset pipelines
Last synced: 22 May 2026
https://github.com/hubmapconsortium/validation-template
Template repository for validating relationships and graph view generation
Last synced: 22 May 2026
https://github.com/hubmapconsortium/hra-previews
HRA Pilot Previews
human-reference-atlas ot2od030545
Last synced: 20 Jan 2026
https://github.com/hubmapconsortium/cross-dataset-atac
Integrates output from atac-seq pipelines across datasets for the purpose of indexing
Last synced: 25 May 2026
https://github.com/hubmapconsortium/py-hubmap-inventory-gource
Codebase visualization with Gource.
Last synced: 25 May 2026
https://github.com/hubmapconsortium/asctb-appscript
Google Sheets tools to process the ASCT+B tables
Last synced: 25 May 2026
https://github.com/hubmapconsortium/hubmap-clt
The HuBMAP Command Line Transfer application
Last synced: 26 May 2026
https://github.com/hubmapconsortium/soft-assay-rules
Rules for "soft" assay classification, and tools to generate and test them.
Last synced: 26 May 2026
https://github.com/hubmapconsortium/multiome-rna-atac-pipeline
Pipeline for unified processing of joint RNA-seq and ATAC-seq measurements for single cells
Last synced: 27 May 2026