Projects in Awesome Lists by ismms-himc
A curated list of projects in awesome lists by ismms-himc .
https://github.com/ismms-himc/clustergrammer2
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
binder binder-ready biology hacktoberfest heatmap javascript jupyter-widgets python regl visualization webgl
Last synced: 09 Apr 2025
https://github.com/ismms-himc/clustergrammer2-notebooks
Examples using Clustergrammer2 to explore high-dimensional datasets.
binder binder-ready bioinformatics jupyter notebook scrna-seq
Last synced: 04 Dec 2024
https://github.com/ismms-himc/clustergrammer-gl
WebGL Clustergrammer JavaScript Library
biology hacktoberfest heatmap regl webgl
Last synced: 04 Dec 2024
https://github.com/ismms-himc/codex_dashboard
Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
Last synced: 04 Dec 2024
https://github.com/ismms-himc/cytutils
Cytometry quality control and reproducibility utilities
Last synced: 04 Dec 2024
https://github.com/ismms-himc/himc_dockers
Docker builds for all tools used by HIMC
Last synced: 26 Mar 2025
https://github.com/ismms-himc/clustergrammer2-signatures
Collection of cell type and cell state signatures built to easily integrate with Clustergrammer2 single cell toolkit.
Last synced: 26 Mar 2025
https://github.com/ismms-himc/himc-10x-data-app
A UI for allowing researchers to view single cell sequencing data (filtered gene bc matrices, raw gene bc matrices, and web summary) associated with their samples. Raw bcl2 files, fastqs, and cellranger count output will be saved in an AWS S3 bucket.
Last synced: 26 Mar 2025
https://github.com/ismms-himc/ismms-himc.github.io
Website for the 2018 HIMC Single-Cell Symposium
Last synced: 26 Mar 2025
https://github.com/ismms-himc/aws-eb-docker-flask
Example dockerized flask app (modified from template) for deployment on Amazon Web Services Elastic Beanstalk.
Last synced: 26 Mar 2025
https://github.com/ismms-himc/clustergrammer2-deprecated
A custom Jupyter widget library built using the widget-ts-cookiecutter.
Last synced: 26 Mar 2025
https://github.com/ismms-himc/luminextools
Luminex related processing pipeline
Last synced: 26 Mar 2025