Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by jmschrei
A curated list of projects in awesome lists by jmschrei .
https://github.com/jmschrei/pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
machine-learning probabilistic-graphical-models python pytorch
Last synced: 15 Oct 2024
https://github.com/jmschrei/apricot
apricot implements submodular optimization for the purpose of selecting subsets of massive data sets to train machine learning models quickly. See the documentation page: https://apricot-select.readthedocs.io/en/latest/index.html
data-science machine-learning python submodular-optimization submodularity
Last synced: 30 Oct 2024
https://github.com/jmschrei/yahmm
Yet Another Hidden Markov Model repository.
Last synced: 31 Oct 2024
https://github.com/jmschrei/tangermeme
Biological sequence analysis for the modern age.
Last synced: 29 Oct 2024
https://github.com/jmschrei/avocado
Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.
Last synced: 08 Nov 2024
https://github.com/jmschrei/torchegranate
A temporary repository hosting a pomegranate re-write using PyTorch as the backend.
Last synced: 07 Nov 2024
https://github.com/jmschrei/ledidi
Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
Last synced: 08 Nov 2024
https://github.com/jmschrei/tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
Last synced: 31 Oct 2024
https://github.com/jmschrei/notebooks
Various notebooks and tutorials on subjects of interest.
Last synced: 08 Nov 2024
https://github.com/jmschrei/bpnet-lite
This repository hosts a minimal version of a Python API for BPNet.
Last synced: 31 Oct 2024
https://github.com/jmschrei/pypore
Tools used to analyze data from nanopore-based experiments.
Last synced: 08 Nov 2024
https://github.com/jmschrei/dragonnfruit
A method for analyzing scATAC-seq experiments.
Last synced: 01 Nov 2024
https://github.com/jmschrei/rambutan
Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
Last synced: 15 Oct 2024
https://github.com/jmschrei/constraint_graphs
Repository for the data and associated notebook for the manuscript "Finding the optimal Bayesian network given a constraint graph."
Last synced: 15 Oct 2024
https://github.com/jmschrei/antz
Bioinformatic tools for biologists, made pythonic!
Last synced: 15 Oct 2024
https://github.com/jmschrei/abada
GUI for analyzing nanopore data, based on the Abada package.
Last synced: 15 Oct 2024
https://github.com/jmschrei/kiwano
Kiwano implements an approach for prioritizing epigenomic and transcriptomic characterization based on submodular selection and imputed experiments
Last synced: 15 Oct 2024
https://github.com/jmschrei/pomegranate_wheel_builder
A temporary repository to play around with building wheels for the notoriously popular and industry revolutionizing package 'pomegranate'
Last synced: 15 Oct 2024
https://github.com/jmschrei/pomegranate_archive
This is an archive of pomegranate 0.14.8 before the PyTorch remake for posterity.
Last synced: 15 Oct 2024
https://github.com/jmschrei/blueberry
Inference of the 3D structure of genomes
Last synced: 15 Oct 2024