https://github.com/krishnanlab/PecanPy

A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

Last synced: 29 Apr 2025

https://github.com/krishnanlab/txt2onto

Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

annotations nlp omics-samples

Last synced: 16 Jan 2026

https://github.com/krishnanlab/obnb

A Python toolkit for setting up benchmarking dataset using biomedical networks

benchmark-datasets computational-biology machine-learning network-biology

Last synced: 16 Jan 2026

https://github.com/krishnanlab/PecanPy_benchmarks

Last synced: 29 Apr 2025

https://github.com/krishnanlab/node2vecplus_benchmarks

Last synced: 16 Jan 2026

https://github.com/krishnanlab/obnbench

Benchmarking repository for OBNB

Last synced: 16 Jan 2026

https://github.com/krishnanlab/txt2onto2.0

Public repo for txt2onto2.0

Last synced: 16 Jan 2026

https://github.com/krishnanlab/.github

Last synced: 16 Jan 2026

https://github.com/krishnanlab/icepop

public repo for icepop

Last synced: 07 Jun 2026

https://github.com/krishnanlab/meta2onto

Frontend and backend for the meta2onto project

Last synced: 16 Jan 2026

https://github.com/krishnanlab/data_imbalance_project

This repository contains code and analyses related to understanding and assessing the impact of class distributions on model predictions.

Last synced: 16 Jan 2026

https://github.com/krishnanlab/txt2onto_prediction_workflow

txt2onto 2.0 text-based predictions

Last synced: 16 Jan 2026

https://github.com/krishnanlab/data-imbalance-project

Last synced: 16 Jan 2026

https://github.com/krishnanlab/similarity_metrics_pipeline

This repository contains tools and scripts for quantifying pairwise similarity between samples based on text descriptions

Last synced: 16 Jan 2026