https://github.com/aplbrain/grandiso-networkx

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

algorithm aplbrain bossdb connectomics dotmotif grand-graphs grand-iso graphs network network-analysis network-biology subgraph-isomorphism ullman vf2

Last synced: 16 Feb 2025

https://github.com/stracquadaniolab/pygna

A Python package for gene network analysis

bioinformatics biostatistics enrichment-analysis network-biology networkx pygna

Last synced: 03 May 2025

https://github.com/selcenari/cernanetsim

Simulation of interactions miRNA:Competing Targets

cerna mirna network-biology network-simulator r tcga tidygraph tidyverse

Last synced: 13 Apr 2025

https://github.com/multiomics-analytics-group/micw2graph

A knowledge graph of the wastewater treatment microbiome and its biological context

biolink-model knowledge-graph metagenomics network-biology streamlit-webapp wastewater-treatment

Last synced: 12 Apr 2025

https://github.com/hydraharish123/networkanalyzer

computational-biology cytoscapejs network-biology reactjs sbml-model

Last synced: 06 Apr 2025

https://github.com/jananiravi/sigmafactor-network-mtb

2016 Sigma factor network in M. tuberculosis | https://jananiravi.github.io/publication/2016/natcomm/

computational-biology mycobacterium-tuberculosis network-biology sigma-factor

Last synced: 20 Mar 2025