Projects in Awesome Lists by mdshw5
A curated list of projects in awesome lists by mdshw5 .
https://github.com/mdshw5/pyfaidx
Efficient pythonic random access to fasta subsequences
bgzf bioinformatics dna fasta genomics indexing protein python samtools
Last synced: 14 May 2025
https://github.com/mdshw5/fastqp
Simple FASTQ quality assessment using Python
bioinformatics fastq kmer-distribution nucleotide-plot python sam
Last synced: 24 Feb 2026
https://github.com/mdshw5/simplesam
Simple pure Python SAM parser and objects for working with SAM records
bam bioinformatics genomics python sam
Last synced: 13 May 2025
https://github.com/mdshw5/hamstring
Tools for generating and decoding error-correcting DNA barcodes
Last synced: 13 May 2025
https://github.com/mdshw5/strandex
Sample an approximate number of reads from a fastq file without reading the entire file
Last synced: 13 May 2025
https://github.com/mdshw5/transcoorder
Convert SAM/BAM files with transcript coordinates to SAM files with genomic coordinates
Last synced: 29 Apr 2026
https://github.com/mdshw5/venusos_starlink
Code for adding control over Starlink POE to VenusOS using ESP32 relay board and Node-RED
Last synced: 21 Apr 2026
https://github.com/mdshw5/galaxy-json-data-source
Data source tool for importing multiple datasets using a JSON schema
Last synced: 27 Apr 2026
https://github.com/mdshw5/mpmd
Configuration and such for my Monoprice mini delta printer
Last synced: 19 Mar 2026
https://github.com/mdshw5/nuvinci-spare-parts
Spare parts for NuVinci CVP hubs
Last synced: 27 Mar 2026
https://github.com/mdshw5/sra-tools-galaxy
NCBI SRA toolkit Galaxy package and tool wrappers
Last synced: 20 Apr 2026
https://github.com/mdshw5/lecture-notes
Lecture notes and example files for FAES BIOF309 Python course
Last synced: 16 Apr 2026
https://github.com/mdshw5/posts
blog posts for mattshirley.com
blog markdown science technology
Last synced: 10 Jan 2026
https://github.com/mdshw5/ortlieb-spare-parts
3D-printable spare parts for Ortlieb bags
Last synced: 31 Jan 2026