Projects in Awesome Lists by openworm

https://github.com/openworm/OpenWorm

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

biology elegans openworm simulation

Last synced: 14 Mar 2025

https://github.com/openworm/openworm

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

biology elegans openworm simulation

Last synced: 14 May 2025

https://github.com/openworm/sibernetic

This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

Last synced: 18 Dec 2025

https://github.com/openworm/org.geppetto

Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

Last synced: 12 Apr 2025

https://github.com/openworm/owmeta

Unified, simple data access python library for data & facts about C. elegans anatomy

metadata rdf

Last synced: 05 Apr 2025

https://github.com/openworm/celegansneuroml

NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302

Last synced: 08 May 2025

https://github.com/openworm/CElegansNeuroML

NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302

Last synced: 19 Jul 2025

https://github.com/openworm/c302

The c302 framework for generating multiscale network models of C. elegans

openworm simulation

Last synced: 07 Apr 2025

https://github.com/openworm/wormbrowser

The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans

Last synced: 07 Apr 2025

https://github.com/openworm/hodgkin_huxley_tutorial

A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

Last synced: 11 Mar 2026

https://github.com/openworm/open-worm-analysis-toolbox

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

Last synced: 18 Dec 2025

https://github.com/openworm/muscle_model

Model of C elegans body wall muscle based on Boyle & Cohen 2008

Last synced: 07 Apr 2025

https://github.com/openworm/openworm_docs

Documentation for OpenWorm, i.e. docs.openworm.org

Last synced: 19 Jul 2025

https://github.com/openworm/cyberelegans

Neuromechanical model of C. Elegans

Last synced: 26 Aug 2025

https://github.com/openworm/bionet

Artificial biological neural network

Last synced: 07 Mar 2026

https://github.com/openworm/org.geppetto.frontend

Geppetto Java frontend bundle

Last synced: 21 Aug 2025

https://github.com/openworm/robots

C. elegans robots

Last synced: 07 Apr 2025

https://github.com/openworm/org.geppetto.core

Geppetto core bundle

Last synced: 30 Oct 2025

https://github.com/openworm/openwormbrowser-ios

OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser

Last synced: 07 Apr 2025

https://github.com/openworm/openworm.github.io

OpenWorm main website

Last synced: 13 Apr 2025

https://github.com/openworm/blender2neuroml

Conversion script to bring neuron models created in Blender into NeuroML format

Last synced: 07 Apr 2025

https://github.com/openworm/pygeppetto

Python Library to create, load, edit and save a Geppetto Model

Last synced: 14 Jul 2025

https://github.com/openworm/tracker-commons

Compilation of information and code bases related to open-source trackers for C. elegans

Last synced: 07 Apr 2025

https://github.com/openworm/channelworm2

Tools and curated datasets to build quantitative models of C. elegans ion channels

Last synced: 07 Apr 2025

https://github.com/openworm/org.geppetto.model.neuroml

NeuroML Model Bundle for Geppetto

Last synced: 07 Apr 2025

https://github.com/openworm/org.geppetto.solver.sph

PCI SPH Solver bundle for Geppetto

Last synced: 30 Jun 2025

https://github.com/openworm/org.geppetto.simulation

Generic simulation bundle for Geppetto

Last synced: 07 Apr 2025

https://github.com/openworm/skeletonextraction

Transforms Sibernetic output into a COLLADA animation

Last synced: 03 Jul 2025

https://github.com/openworm/wormworx

C. elegans simulator

Last synced: 28 Jul 2025

https://github.com/openworm/movement_cloud

Movement Analysis on the cloud

Last synced: 11 Sep 2025

https://github.com/openworm/behavioral_syntax

behavioral syntax analysis based on the paper of Andre Brown

Last synced: 17 Aug 2025

https://github.com/openworm/geppetto-client

The web client of a Geppetto application

Last synced: 07 Apr 2025

https://github.com/openworm/sibernetic_neuron

Interface between Sibernetic and NEURON simulator

Last synced: 07 Apr 2025

https://github.com/openworm/segworm

SegWorm is Matlab code from Dr. Eviatar Yemini built as part of the WormBehavior database (http://wormbehavior.mrc-lmb.cam.ac.uk/)

Last synced: 13 Apr 2025

https://github.com/openworm/org.geppetto.recording

Python project allowing to create a recording for Geppetto

Last synced: 05 Mar 2026

https://github.com/openworm/org.geppetto.frontend.jupyter

Geppetto Jupyter Notebook Extension

Last synced: 07 Apr 2025

https://github.com/openworm/org.geppetto.sibernetic

PCI SPH Model Bundle for Geppetto

Last synced: 11 Mar 2026

https://github.com/openworm/neuropal

Scripts to analyse and convert NeuroPAL datasets

3d celegans neuroml neuroscience openworm

Last synced: 14 Apr 2025

Last synced: 12 Oct 2025

Last synced: 13 Apr 2025

https://github.com/openworm/jenkins

Last synced: 13 Apr 2025