Projects in Awesome Lists by pasted
A curated list of projects in awesome lists by pasted .
https://github.com/pasted/clinical_variant_database
Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioinformatics project @ University of Exeter
bioinformatics biomart database gene-annotations rails-application sidekiq
Last synced: 01 Oct 2025
https://github.com/pasted/variant_parser
Selects possible pathogenic variants from an Alamut output
exome-sequencing hpo variant-parser variants
Last synced: 02 Nov 2025
https://github.com/pasted/targeted_sequencing_pipeline
Targeted sequencing pipeline for the Royal Devon & Exeter Molecular Genetics lab.
bioinformatics bioinformatics-pipeline
Last synced: 26 Jan 2026
https://github.com/pasted/simple_bash_pipeline
Historical version of targeted panel sequencing pipeline for Monogenic Diabetes. Originally developed as Masters in Bioinformatics project @ University of Exeter
bash bioinformatics-pipeline pipeline
Last synced: 20 May 2026
https://github.com/pasted/cooccurrence_matrix
Basic Co-occurrence matrix testbed in Python
Last synced: 02 Nov 2025
https://github.com/pasted/kerplink
Plink pipeline for GWAS Additive / Recessive models
Last synced: 24 Jan 2026
https://github.com/pasted/bolt_parser
Parser to merge multiple external annotations with BOLT-LMM outputs
Last synced: 02 Nov 2025
https://github.com/pasted/dendroscope_parser
Very old dendroscope parser and annotator
Last synced: 02 Nov 2025
https://github.com/pasted/trio_generator
Example workflow to generate a trio VCF from parental data
bioinformatics exome-sequencing genetics
Last synced: 02 Nov 2025
https://github.com/pasted/biomart_query
Rough Biomart example generating Interval Lists from transcript Ids
Last synced: 16 May 2025
https://github.com/pasted/virtual_parser
Virtual panel parser with ruleset for pathogenic variants, for use with Cellbase annotated variants
bioinformatics cellbase-annotated-variants
Last synced: 02 Nov 2025
https://github.com/pasted/mosaic_clusterer
Uses SciKit Learn library's Mean Shift implementation to draw a chart of mosaic variants
Last synced: 07 Jul 2025
https://github.com/pasted/scaml
Single Cell RNA analysis pipeline for Seurat outputs of microglial iPSC, using Scikit Learn Models
Last synced: 13 Oct 2025
https://github.com/pasted/genomewiz
Expert crowdsourcing of structural-variant (SV) labels to build ML models for SV callers
Last synced: 13 Oct 2025
https://github.com/pasted/starlims_report_generator
Example report generator for StarLIMS
Last synced: 01 May 2026
https://github.com/pasted/gene_coverage_report
Small application to demostrate Biomart, Bio-SamTools (ruby wrapper around Samtools) and Nyaplot graphs
Last synced: 02 Nov 2025
https://github.com/pasted/variant_reporting
Parsing of Alamut and GATK base-by-base coverage files to produce Excel reports for Clinical Scientists
Last synced: 02 Nov 2025