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Projects in Awesome Lists by phcerdan
A curated list of projects in awesome lists by phcerdan .
https://github.com/phcerdan/histogram
Histogram in C++11, 1D, simple header-only, inspired by R, calculate and optimize breaks automatically. Accepts different precissions.
Last synced: 14 Nov 2024
https://github.com/phcerdan/configuration_files
My configuration files, including dot_files, vim, and scripts.
Last synced: 14 Nov 2024
https://github.com/phcerdan/perm-montecarlo
PERM: Prune and Enriched Rosenbluth Method. A sequential Montecarlo algorithm with resampling
Last synced: 14 Nov 2024
https://github.com/phcerdan/sgext
Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.
binarization dgtal distance-map generator graph graph-processing hacktoberfest image-processing itk python segmentation skeletonization spatial-graph thin thinning topology vtk
Last synced: 14 Nov 2024
https://github.com/phcerdan/fftradialintensity
Compute radial intensity of the FFT of input image. Used to compare image from TEM with SAXS (scattering). Output: Intensity vs q
Last synced: 14 Nov 2024
https://github.com/phcerdan/itkvtkimageviewer
Image viewer using ITK+VTK. It requires ITKVTKGlue Module enabled in ITK.
Last synced: 14 Nov 2024
https://github.com/phcerdan/monogenicphaseanalysis
Use phase analysis based on the Monogenic Signal (First order Riesz transform) for image enhancement. Based on test from ITKIsotropicWavelets module.
Last synced: 14 Nov 2024
https://github.com/phcerdan/masseysg-resources
Massey study group resources.
Last synced: 14 Nov 2024
https://github.com/phcerdan/itkdigitaltopology
Module collecting and implementing Digital Topology functionalities for ITK
Last synced: 14 Nov 2024
https://github.com/phcerdan/insightjournal-dev
Insightjournal development scripts
Last synced: 14 Nov 2024
https://github.com/phcerdan/itkskeleton
ITKSkeleton from insight-journal Digital Topology http://www.insight-journal.org/browse/publication/120
Last synced: 14 Nov 2024
https://github.com/phcerdan/biopolymers-saxstem-comparison
Software used for the aricle: Biopolymer-Network Characterization: Robust TEM Visualization Validated with Small Angle X-Ray Scattering
Last synced: 14 Nov 2024
https://github.com/phcerdan/bls-gsm_denoising_portilla
Portilla code 2004, with modifications for modern matlab and linux compatibility.
Last synced: 14 Nov 2024
https://github.com/phcerdan/open-source-workshop
Open Source Workshop and Linux Install Party
Last synced: 14 Nov 2024
https://github.com/phcerdan/itkwavelet
External module for ITK providing Wavelet. Forked from OrfeoToolBox
Last synced: 14 Nov 2024
https://github.com/phcerdan/boneinjurytexturespie2019
beamer-SPIE2019BoneInjury
Last synced: 14 Nov 2024
https://github.com/phcerdan/bug_itkimageio
bug minimal example for problems reading a 3D tiff image using itkimageio component
Last synced: 14 Nov 2024
https://github.com/phcerdan/beamer-intro_computing
Introduction to computational resources. Massey Orientation Day 24-02-2017
Last synced: 14 Nov 2024
https://github.com/phcerdan/beamer-leipzig2015
Beamer using mtheme. U. Leipzig talk for soft matter department
Last synced: 14 Nov 2024
https://github.com/phcerdan/workshop_intro_latex
Workshop to Latex, short intro, created by Jiri, Massey University.
Last synced: 14 Nov 2024
https://github.com/phcerdan/scatteringlab-ifs
Scripts used in the scattering lab of IFS. Massey.
Last synced: 14 Nov 2024
https://github.com/phcerdan/slicermatter
An open-source, free comprehensive software for matter and soft-matter image analysis. The initial focus is to extract spatial graphs from biopolymer networks
slicercustomapplication softmatter
Last synced: 14 Nov 2024
https://github.com/phcerdan/slicer_fft
Methods for conversion of images to the frequency domain (Fast Fourier Transform) and filter for manipulation of images in the frequency domain, such as low and high frequency filters, and band pass filters.
Last synced: 14 Nov 2024
https://github.com/phcerdan/talk_open_reproducible_research_tools
Introducing some handy tools for open and reproducible research. Massey University, Physoc, 22 Aug 2017
opensource reproducible-research reveal-js
Last synced: 14 Nov 2024
https://github.com/phcerdan/proxtv_saxstem
Script using proxTV in some images. Used in SAXS-TEM comparison manuscript: https://github.com/phcerdan/biopolymers-TEM-SAXS-comparisson
Last synced: 14 Nov 2024
https://github.com/phcerdan/manuscript_saxs-tem-comparison
Manuscript, originally written in overleaf. Published in: https://pubs.acs.org/doi/abs/10.1021/acs.biomac.7b01773
Last synced: 14 Nov 2024
https://github.com/phcerdan/sandbox
Random Ideas, Tests and Minimum Working Examples,
Last synced: 14 Nov 2024
https://github.com/phcerdan/htcondor_massey
Condor tutorials and different submission files for Massey HTCondor Cluster
Last synced: 14 Nov 2024
https://github.com/phcerdan/hoomd_stickyness
Hoomd simulations about colloidal aggregation with pseudo potential: capture probablity.
Last synced: 14 Nov 2024