Projects in Awesome Lists by satijalab
A curated list of projects in awesome lists by satijalab .
https://github.com/satijalab/seurat
R toolkit for single cell genomics
cran human-cell-atlas single-cell-genomics single-cell-rna-seq
Last synced: 15 May 2025
https://github.com/satijalab/seurat-wrappers
Community-provided extensions to Seurat
community single-cell-analysis single-cell-genomics
Last synced: 05 Apr 2025
https://github.com/satijalab/sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
Last synced: 15 May 2025
https://github.com/satijalab/seurat-data
Dataset distribution for Seurat
datasets single-cell single-cell-genomics
Last synced: 05 Apr 2025
https://github.com/satijalab/azimuth
A Shiny web app for mapping datasets using Seurat v4
shiny-app single-cell-genomics single-cell-rna-seq
Last synced: 01 Mar 2025
https://github.com/satijalab/scchromhmm
🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
chromatin-state histone-modifications single-cell
Last synced: 03 May 2025
https://github.com/satijalab/seurat-docker
Docker images of Seurat
docker human-cell-atlas single-cell single-cell-analysis single-cell-genomics
Last synced: 03 May 2025
https://github.com/satijalab/lung-ccf
Central repo to deposit code for lung CCF project
Last synced: 01 Mar 2025