https://github.com/statgen/pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

Last synced: 26 Jan 2026

https://github.com/statgen/locuszoom

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

gwas gwas-summary-statistics gwas-tools locuszoom locuszoom-plot

Last synced: 26 Jan 2026

https://github.com/statgen/demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

Last synced: 20 Feb 2026

https://github.com/statgen/locuszoom-standalone

Create regional association plots from GWAS or meta-analysis

bioinformatics genetics visualization

Last synced: 26 Jan 2026

https://github.com/statgen/popscle

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

demultiplex rna-seq single-cell-omics single-cell-rna-seq single-cell-sequencing

Last synced: 26 Jan 2026

https://github.com/statgen/savvy

Interface to various variant calling formats.

Last synced: 26 Jan 2026

https://github.com/statgen/topmed_variant_calling

Last synced: 26 Jan 2026

https://github.com/statgen/swiss

Software to help identify overlap between association scan results and GWAS hit catalogs.

Last synced: 26 Jan 2026

https://github.com/statgen/fivex

Interactive eQTL visualizations

Last synced: 26 Jan 2026

https://github.com/statgen/encore

Encore Analysis Server

Last synced: 26 Jan 2026

https://github.com/statgen/raremetal

A flexible tool for meta-analysis

gwas

Last synced: 26 Jan 2026

https://github.com/statgen/gwas-credible-sets

Credible set determination in GWAS results

Last synced: 26 Jan 2026

https://github.com/statgen/hds-util

Last synced: 26 Jan 2026

https://github.com/statgen/encore-client-r

An R package to interact with the Encore analysis server

Last synced: 26 Jan 2026

https://github.com/statgen/raremetal.js

JS implementation of rare variant aggregation tests

genetics

Last synced: 26 Jan 2026

https://github.com/statgen/bravo_api

Server side data processing and retrieval endpoints for BRAVO

Last synced: 26 Jan 2026

https://github.com/statgen/locuszoom-hosted

A web service to upload and share GWAS results with LocusZoom.js

gwas gwas-pipeline gwas-summary-statistics gwas-tools locuszoom locuszoom-plot

Last synced: 26 Jan 2026

https://github.com/statgen/imputationserver2

Imputation Server 2 workflow to facilitate genotype imputation at scale.

Last synced: 02 Mar 2026

https://github.com/statgen/ansible-bravo-deploy

Anisble deployment roles and playbook for BRAVO API and UI

Last synced: 26 Jan 2026

https://github.com/statgen/bravo_vue

BRAVO's Vue JS based UI.

Last synced: 26 Jan 2026

https://github.com/statgen/bravo_data_prep

Work flows and tools to create data that backs the BRAVO API.

Last synced: 26 Jan 2026