https://github.com/ulelab/ultraplex

Ultra-fast 5' and 3' demultiplexer

Last synced: 16 Jan 2026

https://github.com/ulelab/clipplotr

A tool to facilitate comparative visualisation of CLIP data

clip data-visualisation rna-protein-interactions

Last synced: 17 Jan 2026

https://github.com/ulelab/peka

Find motifs enriched around prominent crosslinks

bioinformatics bioinformatics-analysis bioinformatics-scripts

Last synced: 17 Jan 2026

https://github.com/ulelab/clippy

A wrapper around scipy "find_peaks" function to enable peak calling of CLIP data.

Last synced: 17 Jan 2026

https://github.com/ulelab/peka-eclip

Download and prepare ENCODE eCLIP raw fastq for processing with the nf-core/clipseq pipeline

clip nf-core

Last synced: 17 Jan 2026

https://github.com/ulelab/cv_coverage

Last synced: 17 Jan 2026

https://github.com/ulelab/germ

An algorithm for scoring Generalised RNA Multivalency

Last synced: 16 Jan 2026

https://github.com/ulelab/gtf-ops

Filtering GENCODE or ENSEMBLE annotation in GTF format. Annotating missing regions in iCount genomic segmentation.

Last synced: 17 Jan 2026

https://github.com/ulelab/cluster_kmers

Get clusters of k-mers based solely on their sequence or in combination with enrichment in PEKA.

Last synced: 17 Jan 2026

https://github.com/ulelab/rna_maps

Plot CLIP crosslinks around regulated exons to study position-dependent impact on pre-mRNA splicing.

Last synced: 17 Jan 2026

https://github.com/ulelab/interstasis-paper

A repository containing the code for Faraway et al. (2025).

Last synced: 17 Jan 2026

https://github.com/ulelab/imaps

Last synced: 17 Jan 2026

https://github.com/ulelab/bs_assign

Find groups of motifs around genomic landmarks of interest

bioinformatics bioinformatics-analysis bioinformatics-scripts

Last synced: 17 Jan 2026