https://github.com/common-workflow-lab/run-tests

Action for running tests for CWL workflows

common-workflow-language commonwl cwl testing

Last synced: 02 Feb 2026

https://github.com/nci-gdc/varscan-cwl

CWL for GDC VarScan2

bioinformatics cwl workflow

Last synced: 28 Jan 2026

https://github.com/NLeSC/cwl-tutorial

Simple CWL tutorial based on the gentle introduction to CWL

cwl tutorial

Last synced: 10 Mar 2025

https://github.com/NCI-GDC/varscan-cwl

CWL for GDC VarScan2

bioinformatics cwl workflow

Last synced: 10 Mar 2025

https://github.com/nlesc/cwl-tutorial

Simple CWL tutorial based on the gentle introduction to CWL

cwl tutorial

Last synced: 01 Feb 2026

https://github.com/nci-gdc/gdc-mirnaseq-cwl

CWL workflows and tools for the miRNA-Seq workflow

bioinformatics cwl workflow

Last synced: 25 Jan 2026

https://github.com/stjudecloud/rfcs

Request for Comments (RFCs) on the St. Jude Cloud Project.

bioinformatics bioinformatics-pipeline computational-biology cwl cwl-workflow discussion genomics proposal rfcs stjudecloud wdl wdl-workflow workflow workflow-engine

Last synced: 15 Feb 2026

https://github.com/nci-gdc/variant-filtration-cwl

Workflows for filtering GDC VCFs

bioinformatics cwl workflow

Last synced: 28 Feb 2026

https://github.com/kids-first/kf-genotype-refinement-workflow

bioinformatics cwl

Last synced: 01 Mar 2026

https://github.com/stevekm/cwl-nf

Run Nextflow from within a CWL pipeline

cwl nextflow

Last synced: 06 Mar 2026

https://github.com/suzuki-shm/fastANI-in-cwl

Wrapper tool of fastANI by CWL and Docker

bioinformatics common-workflow-language cwl genome

Last synced: 10 Mar 2025

https://github.com/cwl-for-eo/guide

Guide with best practices and examples to adopt CWL in Earth Observation workflows

cwl earth-observation earth-science gdal orfeotoolbox otb snap

Last synced: 10 Mar 2025

https://github.com/bogdang989/sbg_dockstore_tools

cwl

Last synced: 23 Feb 2026

https://github.com/nci-gdc/samtools-mpileup-cwl

CWL for GDC samtools mpileup

bioinformatics cwl workflow

Last synced: 27 Jan 2026

https://github.com/nci-gdc/aliquot-maf-cwl

CWL tools and workflows for generating and processing aliquot-MAF

bioinformatics cwl maf-files workflow

Last synced: 27 Jan 2026

https://github.com/gusellerm/gis_indexgen

Prototype implementation of LivePaper with GIS indices as the subject.

cwl cwl-workflow gis livedata livepaper remote-sensing

Last synced: 16 Jan 2026

https://github.com/umccr/cwl-novice-tutorial

CWL Novice Tutorial

cwl

Last synced: 16 Jan 2026

https://github.com/nci-gdc/vep-cwl

GDC VEP Variant Annotation Workflow

bioinformatics cwl workflow

Last synced: 25 Jan 2026

https://github.com/aldbr/dirac-cwl-proto

Proof of Concept: integrating CWL into Dirac

cwl dirac reproducibility science workflow-management workload-management

Last synced: 18 Jul 2025

https://github.com/fabricebrito/dev-platform-calrissian

Bootstraps a kubernetes environment to run CWL documents with Calrissian

calrissian cwl minikube skaffold

Last synced: 02 Jan 2026

https://github.com/nci-gdc/gdc-sanger-somatic-cwl

CWL Workflows for the Sanger Somatic Workflow

bioinformatics cwl workflow

Last synced: 27 Jan 2026

https://github.com/wtsi-hgi/cwl-dummy

Generates CWL files that do nothing.

common-workflow-language cwl

Last synced: 19 May 2026

https://github.com/nci-gdc/somaticsniper-cwl

CWL for GDC SomaticSniper

bioinformatics cwl workflow

Last synced: 27 Jan 2026

https://github.com/inab/vre_wfexs_executor

WfExS tool job executor for VRE (under development)

cwl nextflow ro-crate tool vre wfexs wrapper

Last synced: 12 Jul 2025

https://github.com/emulation-as-a-service/cwl-rewriter

cwl experiment

Last synced: 10 Mar 2025

https://github.com/emulation-as-a-service/cwl-action

cwl

Last synced: 10 Mar 2025

https://github.com/beroukhim-lab/GATK_CN_CWL

Implementation of the GATK copy number pipeline in CWL (ported from WDL)

cnv cwl gatk gdc wdl

Last synced: 10 Mar 2025

https://github.com/fpsom/intro-to-cwl-docker

Introduction to CWL and Docker

cwl docker training

Last synced: 09 Jul 2025

https://github.com/terradue/ogc-eo-application-package-hands-on

OGC EO Application Package Hands-on

cwl cwl-workflow earth-observation eo python sentinel-2

Last synced: 15 Apr 2026

https://github.com/Terradue/ogc-eo-application-package-hands-on

OGC EO Application Package Hands-on

cwl cwl-workflow earth-observation eo python sentinel-2

Last synced: 10 Mar 2025

https://github.com/COV-IRT/d3b-dev-rnaseq-snv

RNAseq SNV Calling Workflow (beta)

cwl rnaseq workflows

Last synced: 10 Mar 2025

https://github.com/nlesc/cwl-java-sdk

CWL Java SDK (experimental)

cwl java sdk

Last synced: 17 Jun 2025

https://github.com/common-workflow-lab/run-conformance-tests

Action for running CWL conformance tests

common-workflow-language commonwl cwl

Last synced: 02 Feb 2026

https://github.com/nanxstats/cwl-exploder

Shiny app to unpack monolithic CWL workflows

bioinformatics common-workflow-language cwl reticulate shiny-apps

Last synced: 05 Jun 2026

https://github.com/nanxstats/cwl-upgrader

Shiny app to upgrade Common Workflow Language (CWL) apps from sbg:draft2 to v1.0

bioinformatics common-workflow-language cwl reticulate shiny-apps

Last synced: 18 Apr 2026

https://github.com/eoap/ogc-api-processes-with-zoo

OGC API Processes with ZOO Project

cwl cwl-workflow ogc ogc-api

Last synced: 31 Jan 2026

https://github.com/bernddoser/ml-workflow-orchestration

Seminar: Machine Learning Workflow Orchestration

cwl flyte machine-learning workflow

Last synced: 07 Feb 2026

https://github.com/inab/ipc_workflows

iPC Workflows for VRE

cwl ipc ipc-project nextflow singularity vre workflows

Last synced: 01 Mar 2026

https://github.com/NCI-GDC/gdc-sanger-somatic-cwl

CWL Workflows for the Sanger Somatic Workflow

bioinformatics cwl workflow

Last synced: 10 Mar 2025

https://github.com/tom-tan/conformance

Location to store the results of CWL conformance testing for ep3

common-workflow-language commonwl cwl

Last synced: 06 Jan 2026

https://github.com/nci-gdc/gatk4_mutect2_cwl

bioinformatics cwl workflow

Last synced: 14 Feb 2026

https://github.com/fairagro/M4.4_UC6_ARC

UC6 workflow in ARC proof-of-concept

common-workflow-language cwl fairagro

Last synced: 10 Mar 2025

https://github.com/nci-gdc/gdc_tosvc_workflow

GDC Tumor-only Somatic Variant Calling Workflow

bioinformatics cwl workflow

Last synced: 26 Jan 2026

https://github.com/common-workflow-lab/upload-conformance-badges

Action for uploading CWL conformance badges

common-workflow-language commonwl cwl

Last synced: 02 Feb 2026

https://github.com/mattdoug604/help-to-cwl

Automatically generate a bare-bones CWL tool for your program of interest.

cwl python

Last synced: 22 Feb 2025

https://github.com/nci-gdc/mutect2-cwl

CWL for GDC GATK3 MuTect2

bioinformatics cwl workflow

Last synced: 04 Feb 2026

https://github.com/stevekm/toil-elk

Template for running Toil on LSF HPC with ELK stack logging

cwl cwl-workflow elasticsearch elk-stack filebeat hpc logstash lsf toil

Last synced: 29 Nov 2025

https://github.com/ktaletsk/cwl-examples

common-workflow-language commonwl cromwell cwl

Last synced: 31 Jan 2026

https://github.com/systemPipeR/SPblast

BLAST Workflow Template

analysis-pipeline blast cwl development systempiper systempiper-workflows workflow

Last synced: 10 Mar 2025

https://github.com/msk-access/uncollapsed_bam_generation

Workflow for making MSK-ACCESS standard binary alignment mapping file.

cfdna ctdna cwl cwl-workflow umi workflow

Last synced: 10 Feb 2026

https://github.com/justinritchie/clash-of-clans-mcp

MCP server for the Clash of Clans API with a configurable JSON rubric for war grading, elder promotion screening, and CWL carry-forward analysis.

anthropic clan-management clan-war clan-war-league clash clash-of-clans claude claude-desktop coc cwl gaming mcp mcp-server model-context-protocol python supercell

Last synced: 29 Apr 2026

https://github.com/GusEllerm/GIS_IndexGen

Prototype implementation of LivePaper with GIS indices as the subject.

cwl cwl-workflow gis livedata livepaper remote-sensing

Last synced: 10 Mar 2025

https://github.com/dockstore/dockstore-training

Working space for creating dockstore training materials

cwl docker nextflow wdl

Last synced: 20 Jan 2026

https://github.com/nci-gdc/muse-cwl

CWL for GDC MuSE

bioinformatics cwl workflow

Last synced: 27 Jan 2026

https://github.com/NCI-GDC/samtools-mpileup-cwl

CWL for GDC samtools mpileup

bioinformatics cwl workflow

Last synced: 10 Mar 2025