OBO Foundry
The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants follow and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Operations Committee with Editorial, Technical and Outreach working groups.
- GitHub: https://github.com/topics/obofoundry
- Wikipedia: https://en.wikipedia.org/wiki/OBO_Foundry
- Repo: https://github.com/OBOFoundry
- Released: 2003
- Related Topics: web-ontology-language, owl, owl-ontology,
- Aliases: obo,
- Last updated: 2025-04-23 00:20:47 UTC
- JSON Representation
https://github.com/cthoyt/obo-community-health
🫀 Check the OBO Foundry repositories to see what's going on
Last synced: 21 Mar 2025
https://github.com/safisher/ornaseq
Ontology of RNA Sequencing
genomics obofoundry ontology rna-seq rna-seq-analysis rna-sequencing rnaseq
Last synced: 11 Mar 2025
https://github.com/EBISPOT/clyh_ontology
Home of the Clytia hemisphaerica Development and Anatomy Ontology (CLYH)
Last synced: 11 Mar 2025
https://github.com/OpenLHS/LABO
An ontology of informational entities about laboratory tests prescriptions and reports.
Last synced: 11 Mar 2025
https://github.com/monarch-initiative/maxo-annotations
Annotations to terms of the Medical Action Ontology (MAxO)
human-phenotype-ontology maxo medical-actions monarchinitiative mondo-ontology obofoundry therapeutics
Last synced: 14 Feb 2025
https://github.com/rat-genome-database/XCO-Experimental-Condition-Ontology
Experimental Condition Ontology maintained by RGD
clinical-research experimental-conditions human laboratory model-organisms obo obofoundry ontology owl semantic-web xco
Last synced: 11 Mar 2025
https://github.com/drseb/phenopacket-schema
Repository for the GA4GH inlined phenopacket schema
Last synced: 11 Mar 2025
https://github.com/luis-gonzalez-m/Collembola
This repository includes the ontology for the anatomy of Collembola, which includes terms for anatomical systems, sclerites, appendages, chaetotaxy. CLAO is directed to phenotypic annotations, and text mining
anatomy hexapod-anatomy obofoundry ontology text-mining
Last synced: 11 Mar 2025
https://github.com/cthoyt/cthoyt.github.io
My personal website, served at https://cthoyt.com
artificial-intelligence biocuration bioinformatics biological-expression-language cheminformatics deep-learning drug-discovery drug-repurposing drug-synergy knowledge-graph-embeddings knowledge-graphs machine-learning obofoundry ontologies proteochemometrics target-prioritization target-validation toxicology utterances wikidata
Last synced: 16 Mar 2025
https://github.com/obophenotype/cephalopod-ontology
An ontology of cephalopod anatomy and traits
anatomy anatomy-ontology cephalopod cuttlefish evodevo nautilus obofoundry octopus ontology owl semantic-web squid
Last synced: 11 Mar 2025
https://github.com/phenoscape/vertebrate-taxonomy-ontology
The Vertebrate Taxonomy Ontology aims to provide one comprehensive hierarchy for both extinct and extant vertebrates
Last synced: 11 Mar 2025
https://github.com/txpo-ontology/TXPO
Repository for the Toxic process ontology, TXPO.
Last synced: 11 Mar 2025
https://github.com/cmungall/rdf-expressionizer
Translates named classes to equivalent class expressions
Last synced: 04 Apr 2025
https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology
Measurement method ontology maintained by RGD
clinical-research human laboratory measurement-methods mmo model-organisms obo obofoundry ontology owl semantic-web
Last synced: 11 Mar 2025
https://github.com/dictybase/migration-data
Data files required for migration
Last synced: 28 Mar 2025
https://github.com/biopragmatics/debio
🥮 Decentralized Biomedical Ontology
Last synced: 13 Apr 2025
https://github.com/mapping-commons/microbial-trait-mappings
mapping-commons obofoundry sssom
Last synced: 11 Mar 2025
https://github.com/jamesaoverton/qqv
Proposal for qualitative and quantitative values in OBO
Last synced: 11 Mar 2025
https://github.com/drseb/hpo-owl-qc
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
hpo obofoundry ontology phenomics phenotype phenotype-ontologies phenotypes quality-control
Last synced: 09 Apr 2025
https://github.com/drseb/hpo-obo-qc
The QC software for the OBO version of HPO
hpo obofoundry ontology phenomics phenotype phenotype-ontologies phenotypes phenotyping quality-control
Last synced: 09 Apr 2025
https://github.com/rat-genome-database/RS-Rat-Strain-Ontology
Rat strain ontology maintained by RGD
controlled-vocabulary nomenclature obo obofoundry ontologies ontology owl rat rat-strain semantic-web strain symbol
Last synced: 11 Mar 2025
https://github.com/futres/uberonfovt
Module for UBERON to create vertebrate traits terms as part of the FOVT
Last synced: 11 Mar 2025
https://github.com/PaulNSchofield/mpath
Automatically exported from code.google.com/p/mpath
histopathology mammals mice obofoundry pathology phenotype
Last synced: 11 Mar 2025
https://github.com/althonos/obofoundry.rs
Structures to deserialize OBO Foundry listings into.
berkeley-bop obo obofoundry rust serde
Last synced: 11 Apr 2025
https://github.com/balhoff/ubergraph-viz
Example workflow for rendering SPARQL query results from Ubergraph using obographviz
Last synced: 20 Feb 2025
