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OBO Foundry

The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants follow and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Operations Committee with Editorial, Technical and Outreach working groups.

https://github.com/BFO-ontology/BFO

BFO repository including source code and latest documents

obofoundry

Last synced: 03 Nov 2024

https://github.com/althonos/pronto

A Python frontend to (Open Biomedical) Ontologies.

bioinformatics obo obo-graphs obofoundry ontology owl parser python semantic-web

Last synced: 30 Oct 2024

https://github.com/FoodOntology/foodon

The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

agriculture food obofoundry ontology owl

Last synced: 04 Nov 2024

https://github.com/EBISPOT/OLS

Ontology Lookup Service from SPOT at EBI

java neo4j obofoundry owl owl-api

Last synced: 03 Aug 2024

https://github.com/obi-ontology/obi

The Ontology for Biomedical Investigations

bioinformatics obo obofoundry ontology owl semantic-web

Last synced: 23 Oct 2024

https://github.com/information-artifact-ontology/IAO

information artifact ontology

obofoundry ontologies

Last synced: 03 Nov 2024

https://github.com/jannahastings/emotion-ontology

Ontology for emotions and affective phenomena

affective-sciences emotion-ontology obofoundry

Last synced: 22 Oct 2024

https://github.com/evidenceontology/evidenceontology

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

annotation evidence obo obofoundry ontology owl

Last synced: 23 Oct 2024

https://github.com/allysonlister/swo

The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, licences, provenance and associated data.

obofoundry

Last synced: 04 Nov 2024

https://github.com/ISA-tools/stato

This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

obofoundry ontology owl statistics

Last synced: 23 Oct 2024

https://github.com/cmungall/semantic-llama

A knowledge extraction tool that uses a large language model to extract semantic information from text

ai knowledge-extraction language-models linkml oaklib obofoundry

Last synced: 22 Oct 2024

https://github.com/jannahastings/mental-functioning-ontology

Ontology for all aspects of human mental functioning

mentalfunctioning obofoundry ontologies ontology

Last synced: 22 Oct 2024

https://github.com/INCATools/obographviz

Customizable translation of OBO graphs to dot for visualization using graphviz and other tools

graph-visualization graphviz javascript json node obofoundry obographs

Last synced: 23 Oct 2024

https://github.com/BiodiversityOntologies/bco

Biological Collections Ontology

obofoundry

Last synced: 23 Oct 2024

https://github.com/CIDO-ontology/cido

CIDO: Coronavirus Infectious Disease Ontology

coronavirus covid-19 infectious-diseases mers-cov obofoundry ontology sars-cov sars-cov-2

Last synced: 23 Oct 2024

https://github.com/OGMS/ogms

Automatically exported from code.google.com/p/ogms

obofoundry

Last synced: 23 Oct 2024

https://github.com/OBOFoundry/OBO-Dashboard

Summary Dashboard for Open Biological and Biomedical Ontologies

obofoundry

Last synced: 23 Oct 2024

https://github.com/monarch-initiative/GENO-ontology

Repository for representing genotypes and their association with phenotypes

monarchinitiative obofoundry ontology

Last synced: 23 Oct 2024

https://github.com/BFO-ontology/BFO2

BFO 2 classes with relations commonly used by OBO Foundry ontologies defined in RO core

obofoundry

Last synced: 23 Oct 2024

https://github.com/PopulationAndCommunityOntology/pco

An ontology about groups of interacting organisms such as populations and communities

obofoundry

Last synced: 23 Oct 2024

https://github.com/ClinicalTrialOntology/CTO

CTO: Core Ontology of Clinical Trials

clinical-trials obofoundry ontology

Last synced: 23 Oct 2024

https://github.com/evoinfo/miapa

Minimum Information About a Phylogenetic Analysis (MIAPA) vocabularies and tools

information-exchange minimum-information obofoundry phylogenetics standard

Last synced: 23 Oct 2024

https://github.com/cmungall/sweet-obo-alignment

Alignment between ESIP SWEET and Open Bio Ontologies

environment environment-variables mapping obo obofoundry ontology sssom sweet

Last synced: 23 Oct 2024

https://github.com/cthoyt/curies4j

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)

curies java obofoundry semantic-web uris

Last synced: 13 Oct 2024

https://github.com/EBI-BioModels/SBO

The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.

biosimulators computational-biology mathematical-modeling numerical-simulation obofoundry ontology sbml systems-biology

Last synced: 23 Oct 2024

https://github.com/IHCC-cohorts/GECKO

Genomics Cohorts Knowledge Ontology

cohort genomics obofoundry ontology

Last synced: 23 Oct 2024

https://github.com/infectious-disease-ontology/infectious-disease-ontology

The source code of Infectious Disease Ontology (IDO)

obofoundry

Last synced: 23 Oct 2024

https://github.com/biopragmatics/oquat

🎬 Ontology Quality Assesment Toolkit

obofoundry

Last synced: 23 Oct 2024

https://github.com/cthoyt/ontoportal-client

🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal

agroportal bioportal cookiecutter-snekpack ecoportal obo obofoundry ontologies ontoportal python

Last synced: 13 Oct 2024

https://github.com/hymao/hao

Hymenoptera Anatomy Ontology

hymenoptera obofoundry

Last synced: 12 Aug 2024

https://github.com/OmniSearch/omit

Ontology for MicroRNA Target

obo-foundry obofoundry

Last synced: 23 Oct 2024

https://github.com/SVA-SE/HSO

Health Surveillance Ontology

obofoundry

Last synced: 23 Oct 2024

https://github.com/DiseaseOntology/DiseaseDriversOntology

Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI.

disease obofoundry ontology

Last synced: 23 Oct 2024

https://github.com/obophenotype/caro

Working repository for v2 of CARO

obofoundry

Last synced: 23 Oct 2024

https://github.com/OpenLHS/LABO

An ontology of informational entities about laboratory tests prescriptions and reports.

obofoundry

Last synced: 23 Oct 2024

https://github.com/cthoyt/obo-community-health

🫀 Check the OBO Foundry repositories to see what's going on

obofoundry

Last synced: 28 Oct 2024

https://github.com/obophenotype/sibo

Social Insect Behavior Ontology

obofoundry ontology

Last synced: 23 Oct 2024

https://github.com/phenoscape/vertebrate-taxonomy-ontology

The Vertebrate Taxonomy Ontology aims to provide one comprehensive hierarchy for both extinct and extant vertebrates

obofoundry

Last synced: 23 Oct 2024

https://github.com/EBISPOT/clyh_ontology

Home of the Clytia hemisphaerica Development and Anatomy Ontology (CLYH)

obofoundry ontology

Last synced: 23 Oct 2024

https://github.com/drseb/phenopacket-schema

Repository for the GA4GH inlined phenopacket schema

obofoundry

Last synced: 23 Oct 2024

https://github.com/cmungall/agrovoc-obo

Agrovoc alignment to OBO Ontologies

mapping obofoundry ontology ontology-matching sssom

Last synced: 30 Oct 2024

https://github.com/MPIO-Developers/MPIO

Minimum PDDI Information Ontology

obofoundry

Last synced: 23 Oct 2024

https://github.com/txpo-ontology/TXPO

Repository for the Toxic process ontology, TXPO.

obofoundry ontology

Last synced: 23 Oct 2024

https://github.com/cmungall/rdf-expressionizer

Translates named classes to equivalent class expressions

bfo obofoundry upper-ontology

Last synced: 30 Oct 2024

https://github.com/nandadorea/HSO

Health Surveillance Ontology

obofoundry

Last synced: 23 Oct 2024

https://github.com/PaulNSchofield/mpath

Automatically exported from code.google.com/p/mpath

histopathology mammals mice obofoundry pathology phenotype

Last synced: 23 Oct 2024

https://github.com/althonos/obofoundry.rs

Structures to deserialize OBO Foundry listings into.

berkeley-bop obo obofoundry rust serde

Last synced: 13 Oct 2024

https://github.com/cmungall/obo-metadata

EXPERIMENTAL obo metadata repo

linkml metadata obofoundry

Last synced: 30 Oct 2024

https://github.com/futres/uberonfovt

Module for UBERON to create vertebrate traits terms as part of the FOVT

obofoundry uberon

Last synced: 23 Oct 2024

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