Python 2

Compound-protein Interaction (CPI) 175 Binding Site Prediction 44 Data 27 Representations for Proteins 20 Machine Learning Algorithms 19 Review 19 Molecular Property Prediction 17 Protein Structure Prediction 13 Antigen-Antibody 12 RNA 12 Effects of Mutations 10 Targeted Protein Degradation 7 Representations for Molecules 4 Roadmap 1 Protein-protein Interaction (PPI) 1 Enzyme 1 Protein Design 1 De Novo Molecule Design 1

Protein Sequence Based 99 Learning from Protein Structures 79 Structure Based (CNN) 21 PROTAC 19 Sparsity and Popularity Biases 15 Deep Docking 15 Protein-RNA Interaction 12 Structure Based (GNN) 12 Data Sets 12 Link Prediction 11 Protein Language Models (PLMs) 10 Databases 10 Latent Biases 9 Benchmark 9 Docking Scoring Function 8 Frequent Hitters 8 Multitarget-directed Ligands 5 ADMET 4 Uncertainty 3 Protein 1 Interpretation 1 Virtual Screening Pipeline 1

self-supervised-learning 4 deep-learning 4 graph-neural-networks 3 machine-learning 3 pre-training 2 graph-representation-learning 2 representation-learning 2 collaborative-filtering 1 graph-contrastive-learning 1 recommendation 1 protein-embedding 1 protein-modeling 1 protein-representation-learning 1 protein-sequences 1 artificial-intelligence 1 awesome 1 awesome-list 1 protein 1 protein-structure 1 data-augmentation 1 pretext-task 1 transfer-learning 1 unsupervised-learning 1 graph-mining 1 graph-self-supervised-learning 1 pretraining 1 contrastive-learning 1