Python 2

Compound-protein Interaction (CPI) 176 Binding Site Prediction 44 Data 27 Representations for Proteins 20 Machine Learning Algorithms 19 Review 19 Molecular Property Prediction 17 Protein Structure Prediction 13 Antigen-Antibody 12 RNA 11 Effects of Mutations 10 Targeted Protein Degradation 7 Representations for Molecules 4 Roadmap 1 Protein-protein Interaction (PPI) 1 Enzyme 1 Protein Design 1 De Novo Molecule Design 1

Protein Sequence Based 99 Learning from Protein Structures 79 Structure Based (CNN) 21 PROTAC 19 Sparsity and Popularity Biases 15 Deep Docking 15 Structure Based (GNN) 12 Data Sets 12 Link Prediction 11 Protein-RNA Interaction 11 Protein Language Models (PLMs) 10 Databases 10 Latent Biases 9 Docking Scoring Function 9 Benchmark 9 Frequent Hitters 8 Multitarget-directed Ligands 5 ADMET 4 Uncertainty 3 Protein 1 Interpretation 1 Virtual Screening Pipeline 1

self-supervised-learning 4 deep-learning 4 graph-neural-networks 3 machine-learning 3 pre-training 2 graph-representation-learning 2 representation-learning 2 collaborative-filtering 1 graph-contrastive-learning 1 recommendation 1 protein-embedding 1 protein-modeling 1 protein-representation-learning 1 protein-sequences 1 artificial-intelligence 1 awesome 1 awesome-list 1 protein 1 protein-structure 1 data-augmentation 1 pretext-task 1 transfer-learning 1 unsupervised-learning 1 graph-mining 1 graph-self-supervised-learning 1 pretraining 1 contrastive-learning 1