Projects in Awesome Lists tagged with cdiff
A curated list of projects in awesome lists tagged with cdiff .
https://github.com/ssi-dk/cdiff_fbi
Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).
cdiff fbi tandem-repeats toxins typing
Last synced: 04 Mar 2026
https://github.com/ssi-dk/bps_fbi_scripts_clostyper
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
cdiff clostridioides-difficile clostyper mge phages plasmids transposons
Last synced: 05 Sep 2025
https://github.com/ssi-dk/bifrost_sp_cdiff
Cdiff related analysis for the SOFI platform.
Last synced: 17 Jul 2026