https://github.com/whitews/flowkit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

cytometry data-science fcs fcs-files flow-cytometry flow-cytometry-analysis flowjo gatingml immunology python

Last synced: 02 Apr 2026

https://github.com/whitews/flowio

A Python library for reading and writing Flow Cytometry Standard (FCS) files

cytometry fcs fcs-files flow-cytometry flow-cytometry-analysis flow-cytometry-files immunology python

Last synced: 06 Apr 2025

https://github.com/lmweber/cytometry-clustering-comparison

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

bioinformatics clustering comparison cytof flow-cytometry mass-cytometry single-cell

Last synced: 06 Jul 2025

https://github.com/lcsb-biocore/gigasom.jl

Huge-scale, high-performance flow cytometry clustering in Julia

artifical-neural-network artificial-intelligence clustering clustering-methods cytof cytometry flow-cytometry huge-scale immunology large-scale mass-cytometry neural-networks self-organizing-map som

Last synced: 11 Apr 2025

https://github.com/morganconrad/fcs

Javascript / node.js code to read FCS flow cytometry data

fcs flow-cytometry javascript nodejs

Last synced: 21 Mar 2025

https://github.com/whitews/flowutils

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

cytometry fcs fcs-files flow flow-cytometry flow-cytometry-analysis flow-cytometry-data python

Last synced: 22 Jul 2025

https://github.com/tlnagy/fcsfiles.jl

🧫 Read Flow Cytometry Standard (FCS) files in Julia

fcs flow-cytometry flow-cytometry-analysis julia

Last synced: 28 Oct 2025

https://github.com/laderast/flowdashboard

Shiny Modules for visualizing flow cytometry data

dashboard flow-cytometry flow-cytometry-analysis shiny shiny-modules visualization

Last synced: 25 Sep 2025

https://github.com/laderast/flowDashboard

Shiny Modules for visualizing flow cytometry data

dashboard flow-cytometry flow-cytometry-analysis shiny shiny-modules visualization

Last synced: 08 May 2025

https://github.com/plantarum/flowploidy

An R package for flow cytometry histogram analysis

bioconductor evolution flow-cytometry polyploidy

Last synced: 18 Feb 2026

https://github.com/whitews/reflow

Django-based Repository for Flow Cytometry Data

django fcs fcs-files flow-cytometry flow-cytometry-analysis flow-cytometry-data javascript python

Last synced: 29 Apr 2025

https://github.com/gitdemont/ifc

Tools for Imaging Flow Cytometry

cytometry cytometry-data flow flow-cytometry flow-cytometry-analysis flow-cytometry-data flow-cytometry-files ifc image imaging-flow-cytometry imaging-flow-cytometry-data microscopy r

Last synced: 18 Mar 2025

https://github.com/xwu/flowkit

A library for analyzing flow cytometry data

flow-cytometry swift

Last synced: 13 Jul 2026

https://github.com/martindisch/fcs

Low-level Flow Cytometry Standard (FCS) file serializer/deserializer

fcs flow-cytometry flow-cytometry-data flow-cytometry-files

Last synced: 28 Oct 2025

https://github.com/whitews/flowvis

A collection of visualization examples for Flow Cytometry Data

fcs fcs-files flow flow-cytometry flow-cytometry-data javascript

Last synced: 14 Jun 2026

https://github.com/lance-waller-lab/gater

Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation

cran cran-r cytometry flow-cytometry gating kernel-density-estimation mass-cytometry non-euclidean-spaces r r-package rstats rstats-package spatial-analysis

Last synced: 22 Oct 2025

https://github.com/mjendrusch/learning-ifc

deep-learning deep-neural-networks flow-cytometry imaging-flow-cytometry machine-learning paper-implementations

Last synced: 29 Oct 2025

https://github.com/wwu-mmll/gatenet

Official implementation of GateNet

cytof cytometry flow-cytometry gating mass-cytometry single-cell

Last synced: 16 Jan 2026

https://github.com/leipzig/fcs_upbrowse

CytoVas fcs uploader and file browser

fcs-files flow-cytometry

Last synced: 22 Jan 2026

https://github.com/leipzig/fcs_batch_titration

batch-titration is a container that allows for one or more fcs files to be automatically processed (using AWS Batch or other runners). It produces an html document.

fcs-files flow-cytometry

Last synced: 12 Apr 2025

https://github.com/j4c0bs/xfcs

FCS (3.0, 3.1) data and metadata extractor

flow-cytometry flow-cytometry-data

Last synced: 26 Mar 2025

https://github.com/leipzig/fcs_lambda

parse fcs files in s3 and store various metadata in dynamodb

fcs-files flow-cytometry

Last synced: 06 Oct 2025