Projects in Awesome Lists tagged with monkeypox
A curated list of projects in awesome lists tagged with monkeypox .
https://github.com/uphl-biongs/cecret
Reference-based consensus creation
amplicon bioinformatics monkeypox nextflow sars-cov-2
Last synced: 10 Feb 2026
https://github.com/nextstrain/mpox
Nextstrain build for mpox virus
augur auspice bioinformatics genbank genomic-epidemiology metadata monkeypox mpox nextstrain pathogen phylogenetics pipeline virus-evolution
Last synced: 09 May 2025
https://github.com/ecohealthalliance/mpx-diagnosis
Supplement to: Enhanced surveillance of monkeypox in Bas-Uélé, Democratic Republic of Congo: the limitations of symptom-based case definitions
compendium epidemiology monkeypox r
Last synced: 26 Jul 2025
https://github.com/theldb/monkeypox-api
An API & Scraper that allows quick and easy access to both country & state data for Monkeypox
Last synced: 28 Mar 2025
https://github.com/n1k0/monkeypox-stats
Experiments with open data & dataviz about the monkeypox pandemic
dataviz monkeypox monkeypoxtracker pandemic pandemic-analysis
Last synced: 21 Jul 2025
https://github.com/openomics/mpox-seek
A rapid pipeline for targeted and whole-genome ONT monkeypox sequencing
conda mamba monkeypox mpox oxford-nanopore phylogenetics pipeline rapid singularity snakemake
Last synced: 18 Jan 2026
https://github.com/ceciliacode/monomap
This project involves creating a scalable, CRUD REST API to manage Monkeypox cases in Mexico using Node.js, TypeScript, and MongoDB. Includes email notifications with Mapbox integration, and a cron job to check for new cases every 10 seconds. The API is containerized with Docker and uses GitHub Actions for automated Docker image building.
api api-rest cron-jobs cronjob-scheduler crud docker docker-compose docker-hub docker-image dockerfile github github-actions mongodb monkeypox monkeypoxtracker node-js secret-management typescript
Last synced: 13 Apr 2026
