https://github.com/neherlab/sars-cov-2_variant-reports

Informal summaries of notable SARS-CoV-2 lineages

covid-19 sars-cov-2 sars-cov-2-variants virus-evolution

Last synced: 09 Apr 2025

https://github.com/mtisza1/Cenote-Taker2

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

annotation cenote-taker2 cenote-unlimited-breadsticks discovery genbank hallmark hhblits hhsearch metagenomes prophage prophage-prediction virome virus virus-discovery virus-evolution virus-sequences

Last synced: 23 Mar 2025

https://github.com/nextstrain/mpox

Nextstrain build for mpox virus

augur auspice bioinformatics genbank genomic-epidemiology metadata monkeypox mpox nextstrain pathogen phylogenetics pipeline virus-evolution

Last synced: 09 May 2025

https://github.com/neherlab/nextclade_data_workflows

nextclade nextstrain phylogenetics snakemake virus-evolution

Last synced: 05 Apr 2025

https://github.com/PathoGenOmics-Lab/VIPERA

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

bioinformatics intrahost reporting sars-cov-2 snakemake virus-evolution

Last synced: 23 Mar 2025

https://github.com/neherlab/ba286

BA.2.86 project with Sigal lab

bioinformatics computational-biology genomic-epidemiology nextstrain phylogenetics sars-cov-2 sars-cov-2-variants snakemake treetime virus-evolution

Last synced: 09 Apr 2025