Projects in Awesome Lists tagged with mutational-signatures

https://github.com/ShixiangWang/sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

bayesian-nmf bioinformatics cancer-research cnv copynumber-signatures cosmic-signatures dbs easy-to-use indel mutational-signatures nmf nmf-extraction r sbs signature-extraction somatic-mutations somatic-variants visualization

Last synced: 04 Dec 2024

https://github.com/shixiangwang/sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

bayesian-nmf bioinformatics cancer-research cnv copynumber-signatures cosmic-signatures dbs easy-to-use indel mutational-signatures nmf nmf-extraction r sbs signature-extraction somatic-mutations somatic-variants visualization

Last synced: 06 Apr 2025

https://github.com/shixiangwang/sigflow

Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow

mutational-signatures pipeline sigminer

Last synced: 12 Apr 2025

https://github.com/shixiangwang/sigminer.prediction

Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

keras mutational-signatures prostate-cancer sigminer

Last synced: 12 Apr 2025

https://github.com/jennalandy/bayesnmf

R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of latent factors while quantifying uncertainties of the learned matrices.

bayesian-inference bayesian-nmf gibbs-sampling matrix-factorization mutational-signatures nmf non-negative-matrix-factorization r-package