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Projects in Awesome Lists tagged with mutational-signatures

A curated list of projects in awesome lists tagged with mutational-signatures .

https://github.com/ShixiangWang/sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

bayesian-nmf bioinformatics cancer-research cnv copynumber-signatures cosmic-signatures dbs easy-to-use indel mutational-signatures nmf nmf-extraction r sbs signature-extraction somatic-mutations somatic-variants visualization

Last synced: 04 Dec 2024

https://github.com/uscbiostats/hilda

:package: An R package for inferring the mutational exposures difference between groups.

mutational-signatures r-package rjags somatic-mutations

Last synced: 11 Nov 2024

https://github.com/edawson/tidysig

A tidyverse-style package for plotting mutational signatures and context counts.

cancer-genomics ggplot2 mutational-signatures tidy-data tidyverse

Last synced: 10 Nov 2024

https://github.com/uscbiostats/imutsig

iMutSig: a web application to identify the most similar mutational signature using shiny

cosine-similarity mutational-signatures r shiny

Last synced: 11 Nov 2024

https://github.com/jennalandy/bayesnmf

R package implementing Bayesian NMF using various models and prior structures.

bayesian-inference bayesian-nmf gibbs-sampling matrix-factorization mutational-signatures nmf non-negative-matrix-factorization r-package

Last synced: 17 Nov 2024

https://github.com/edawson/assisi

A somatic mutation signature simulator

autoencoders mutational-signatures simulation snvs

Last synced: 10 Nov 2024