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Projects in Awesome Lists tagged with paw-pipeline
A curated list of projects in awesome lists tagged with paw-pipeline .
https://github.com/pwilmart/maxquant_and_paw
Compares PAW and MQ for a 7-channel TMT experiment; compares edgeR to two-sample t-test
comet jupyter-notebook maxquant paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/plubell_2017_paw
Data from Plubell et al., 2017 processed with the PAW pipeline.
irs-normalization jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/bcp-all_qe-tmt_nat-comm-2019
Re-analysis of data from childhood acute lymphoblastic leukemia study in Nat. Comm. April 2019
irs-normalization jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analyses
Last synced: 13 Nov 2024
https://github.com/pwilmart/sea_lion_urine_spc
Sea lion urine comparison with spectral counting.
edger jupyter-notebook paw-pipeline proteomics r spectral-counting spectral-counts
Last synced: 13 Nov 2024
https://github.com/pwilmart/abrf_iprg_2015_spc
A spectral counting analysis of the ABRF iPRG 2015 study
abrf-study jupyter-notebook paw-pipeline proteomics r specrtal-counting spectral-counts
Last synced: 13 Nov 2024
https://github.com/pwilmart/yeast_carbonsources
Yeast TMT data - 3 different carbon sources (from Gygi lab) analyzed with PAW pipeline and MaxQuant
jupyter-notebook paw-pipeline proteomics r statistical-testing tmt tmt-data-analyses
Last synced: 13 Nov 2024
https://github.com/pwilmart/yeast_triple_ko_tmt
R analysis of TMT data from Yeast triple knockout strains (Paulo et al., 2016, JASMS, v27, p1620-25)
irs-normalization jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/dilution_series
Tandem Mass Tag (TMT) dilution series analysis
jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analyses
Last synced: 13 Nov 2024
https://github.com/pwilmart/smith_spc_2018
A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks
edger jupyter-notebooks paw-pipeline proteomics r spectral-counting statistical-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/jpr-201712_ms2-ms3
Public TMT data comparing MS2 to MS3 methods
jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024