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Projects in Awesome Lists tagged with tmt-data-analysis
A curated list of projects in awesome lists tagged with tmt-data-analysis .
https://github.com/Vitek-Lab/MSstatsTMT
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
labeling mass-spectrometry msstats proteomics tmt tmt-data-analysis
Last synced: 12 Nov 2024
https://github.com/dev-ev/isobaric-prot-wf-r
Simple workflows for the isobaric-labeling proteomic data from Proteome Discoverer with ANOVA, t-testing, DEqMS/limma and annotation via fgsea
data-visualization deqms limma proteomics proteomics-data statistical-analysis tmt-data-analysis
Last synced: 19 Nov 2024
https://github.com/dev-ev/prot-rna-umap-clustering
Joint UMAP embedding and clustering of proteomic and transcriptomic data
clustering jupyterlab mass-spectrometry proteomics proteomics-data-integration tmt-data-analysis transcriptomics umap
Last synced: 19 Nov 2024
https://github.com/dev-ev/isobaric-correlations
Exploring correlations in an isobaric labeling mass spectrometry-based proteomic data set
correlation-matrix escherichia-coli isobaric-quantification pearson-correlation-coefficient proteomics proteomics-data-analysis tmt-data-analysis
Last synced: 19 Nov 2024
https://github.com/pwilmart/maxquant_and_paw
Compares PAW and MQ for a 7-channel TMT experiment; compares edgeR to two-sample t-test
comet jupyter-notebook maxquant paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/plubell_2017_paw
Data from Plubell et al., 2017 processed with the PAW pipeline.
irs-normalization jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/multiple_tmt_mq
Developing mouse lens done with MQ
irs-normalization jupyter-notebook maxquant proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/sps-ms3_vs_ms2_tmt
Comparison of SPS MS3 TMT data to MS2 TMT data
jupyter-notebook proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/jpr-201712_ms2-ms3
Public TMT data comparing MS2 to MS3 methods
jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024
https://github.com/pwilmart/yeast_triple_ko_tmt
R analysis of TMT data from Yeast triple knockout strains (Paulo et al., 2016, JASMS, v27, p1620-25)
irs-normalization jupyter-notebook paw-pipeline proteomics r tmt tmt-data-analysis
Last synced: 13 Nov 2024