Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by dev-ev
A curated list of projects in awesome lists by dev-ev .
https://github.com/dev-ev/ms-interactive-viz
Customizable and informative mass spectra with Bokeh
bokeh interactive-visualizations mass-spectrometry proteomics visualization
Last synced: 19 Nov 2024
https://github.com/dev-ev/isobaric-prot-wf-r
Simple workflows for the isobaric-labeling proteomic data from Proteome Discoverer with ANOVA, t-testing, DEqMS/limma and annotation via fgsea
data-visualization deqms limma proteomics proteomics-data statistical-analysis tmt-data-analysis
Last synced: 19 Nov 2024
https://github.com/dev-ev/prot-rna-umap-clustering
Joint UMAP embedding and clustering of proteomic and transcriptomic data
clustering jupyterlab mass-spectrometry proteomics proteomics-data-integration tmt-data-analysis transcriptomics umap
Last synced: 19 Nov 2024
https://github.com/dev-ev/isobaric-inspection-jupyter
Inspecting the quality of isobaric labeling proteomic data in a Jupyter notebook. Data output from Proteome Discoverer.
data-quality data-visualization data-wrangling isobaric-labeling jupyterlab mass-spectrometry proteome-discoverer proteomics proteomics-data-analysis python quantitative-proteomics
Last synced: 19 Nov 2024
https://github.com/dev-ev/isobaric-correlations
Exploring correlations in an isobaric labeling mass spectrometry-based proteomic data set
correlation-matrix escherichia-coli isobaric-quantification pearson-correlation-coefficient proteomics proteomics-data-analysis tmt-data-analysis
Last synced: 19 Nov 2024
https://github.com/dev-ev/julia-vs-python-ms-scripting
Performance of Julia and Python for reading and matching mass spectrometry data
benchmarking julia mass-spectrometry numpy performance-testing proteomics-data-analysis python
Last synced: 19 Nov 2024
https://github.com/dev-ev/shiny-qc-dashboard
QC dashboard for LC-MS proteomic equipment using R and shinydashboard
dashboard data-visualization mass-spectrometry orbitrap-ms performance-monitoring proteomics shiny shinydashboard
Last synced: 19 Nov 2024
https://github.com/dev-ev/bokeh-qc-dashboard
QC dashboard for LC-MS proteomic equipment using python and bokeh
bokeh bokeh-dashboard data-visualization mass-spectrometry orbitrap-ms performance-monitoring proteomics
Last synced: 19 Nov 2024
https://github.com/dev-ev/protexam
Inspect your quantitative proteomics results using this streamlit-powered dashboard. The dashboard is specifically tailored for the comprehensive examination of the result of isobaric labeling-based quantitative proteomics.
mass-spectrometry proteomics streamlit streamlit-webapp visualization
Last synced: 09 Nov 2024
https://github.com/dev-ev/qc-script-pd24
QC scripts for LC-MS proteomic equipment based on Proteome Discoverer 2.4 output
lumos mass-spectrometer mass-spectrometry orbitrap-ms proteome-discoverer proteomics proteomics-data qc-scripts sqlite-database
Last synced: 19 Nov 2024
https://github.com/dev-ev/gag-search-dashboard
Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh
clustering glycans glycobiology mass-spectrometry orbitrap-ms proteome-discoverer
Last synced: 19 Nov 2024