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Projects in Awesome Lists tagged with pubmed-abstracts
A curated list of projects in awesome lists tagged with pubmed-abstracts .
https://github.com/ncbi-nlp/bluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
bert bert-model language-model mimic-iii natural-language-processing pubmed pubmed-abstracts
Last synced: 02 Aug 2024
https://github.com/dermatologist/ckblib
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
ctakes hacktoberfest knowledge-graph neo4j pubmed-abstracts pubmed-parser
Last synced: 01 Nov 2024
https://github.com/boudinfl/clirec
CLinical Information Retrieval Evaluation Collection
information-retrieval medical-dataset natural-language-processing nlp pubmed-abstracts test-collection
Last synced: 14 Oct 2024
https://github.com/gauravcodepro/tair-pubmed-connector
There is no function to fetch automatically the information on the reported pubmed articles links in the tair to be used for the language models, so i coded this function which will take the tair information, a gene or locus tag and will fetch the corresponding pubmed and then from the pubmed the corresponding abstracts
bioinformatics bioinformatics-analysis bioinformatics-tool genome-annotation language-model pubmed pubmed-abstracts pubmed-articles-grabber pubmed-records tair3
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/langchain-candida-literature-miner
candida literature bert machine learning. works on any literature term from pubmed.
fungal-genomes fungalgenomics machinelearning natural-language-generation natural-language-processing pubmed pubmed-abstracts pubmed-records
Last synced: 09 Nov 2024