Projects in Awesome Lists tagged with pubmed-parser
A curated list of projects in awesome lists tagged with pubmed-parser .
https://github.com/titipata/pubmed_parser
:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
article doi medline-xml nlp parse parser pmid pubmed-central pubmed-parser python xml
Last synced: 14 May 2025
https://github.com/dermatologist/ckblib
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
ctakes hacktoberfest knowledge-graph neo4j pubmed-abstracts pubmed-parser
Last synced: 19 Apr 2025
https://github.com/nalomran/pubmed2doc
Write PubMed search results with two display options (citation or listview) to PDF or Word
bioinformatics biopython docx fpdf pubmed pubmed-parser python3
Last synced: 10 Apr 2025
https://github.com/hscells/transmute
PubMed/Medline query transpiler
medline medline-parser pubmed pubmed-parser systematic-reviews
Last synced: 12 Apr 2025
https://github.com/cyanheads/pubmed-mcp-server
A Model Context Protocol (MCP) server enabling AI agents to intelligently search, retrieve, and analyze biomedical literature from PubMed via NCBI E-utilities. Includes a research agent scaffold. STDIO & HTTP
ai-agents ai-tools bio-medical-research mcp mcp-server model-context-protocol ncbi pubmed pubmed-api pubmed-parser
Last synced: 29 Jun 2025
https://github.com/suqingdong/pubmed_xml
PubMed XML Parser
pubmed pubmed-parser pubmed-xml
Last synced: 25 Dec 2025
https://github.com/astrabert/biomedicalpapersbot
A Gradio bot to retrieve PubMed papers' title, doi, authors and publication date based on general search terms or on specific publication names
academic-research academic-resources automation biomedical gradio papers pubmed-parser python scraping
Last synced: 24 Sep 2025
https://github.com/multivacplatform/multivac-pubmed
Update PubMed articles daily on HDFS by using Spark Cluster
apache-spark dataframe hadoop hdfs pubmed pubmed-parser spark-sql yarn
Last synced: 06 May 2026
https://github.com/elrf3lipes/ramon-s_portfolio
I'm passionate about Cloud and DevOps, and for the moment I'm posting some of my work and personal projects here to showcase that. If its useful for you, feel free to integrate or contribute!
api-integration biopython clinical-trials data-analysis data-extraction data-parsing django docker entrez ipython medline-xml pandas pubmed-parser requests rest-api
Last synced: 27 Mar 2026
