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Projects in Awesome Lists tagged with pubmed-parser

A curated list of projects in awesome lists tagged with pubmed-parser .

https://github.com/titipata/pubmed_parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

article doi medline-xml nlp parse parser pmid pubmed-central pubmed-parser python xml

Last synced: 19 Dec 2024

https://github.com/dermatologist/ckblib

Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J

ctakes hacktoberfest knowledge-graph neo4j pubmed-abstracts pubmed-parser

Last synced: 01 Nov 2024

https://github.com/nalomran/pubmed2doc

Write PubMed search results with two display options (citation or listview) to PDF or Word

bioinformatics biopython docx fpdf pubmed pubmed-parser python3

Last synced: 07 Nov 2024

https://github.com/gauravcodepro/pubmed-abstract-fetcher

This function will prepare the abstract and the id information for all the pubmed articles that you want to read and have as a citation. I coded this using a web scraping approach and it is blazing fast and parses better than ncbi eutils

bioinformatics corpus genomics language-model language-modeling natural-language-processing pubmed pubmed-parser

Last synced: 09 Nov 2024

https://github.com/multivacplatform/multivac-pubmed

Update PubMed articles daily on HDFS by using Spark Cluster

apache-spark dataframe hadoop hdfs pubmed pubmed-parser spark-sql yarn

Last synced: 13 Nov 2024

https://github.com/elrf3lipes/ramon-s_portfolio

I'm passionate about Cloud and DevOps, and for the moment I'm posting some of my work and personal projects here to showcase that. If its useful for you, feel free to integrate or contribute!

api-integration biopython clinical-trials data-analysis data-extraction data-parsing django docker entrez ipython medline-xml pandas pubmed-parser requests rest-api

Last synced: 18 Nov 2024