https://github.com/r3fang/SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

bioinformatics-pipeline epigenetics machine-learning-algorithms sequencing single-cell-analysis single-cell-atac-seq

Last synced: 10 May 2025

https://github.com/yanwu2014/swne

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

bioinformatics data-visualization dimensionality-reduction nonnegative-matrix-factorization single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-rna-seq statistical-methods

Last synced: 09 Apr 2025

https://github.com/SUwonglab/scABC

atac-seq single-cell single-cell-atac-seq

Last synced: 10 May 2025

https://github.com/jgasmits/ananseseurat

Single cell ANANSE Gene-regulatory-network analysis from Seurat objects

grn-analysis r seurat-objects single-cell single-cell-atac-seq single-cell-rna-seq

Last synced: 07 May 2025

https://github.com/aryarm/sc_rats

Analyzing single cell ATAC data from the brains of drugged rats

neuroscience rattus-norvegicus single-cell-atac-seq

Last synced: 23 Feb 2025