https://github.com/amelgh/dnaseq-variantcalling

dnaseq mapping qc variantcalling

Last synced: 24 Dec 2025

https://github.com/bibymaths/sars_genome_assembly

A complete pipeline for assembling and analyzing the SARS-CoV-2 genome from Illumina paired-end reads, featuring quality control, mapping, variant calling, consensus sequence generation, lineage annotation, and phylogenetic analysis. Designed for efficient and modular bioinformatics workflows.

genome-assembly illumina sars-cov-2 variantcalling

Last synced: 23 Mar 2025

https://github.com/bibymaths/nf-illumina2lineage

A Nextflow pipeline for SARS-CoV-2 genome assembly and analysis from Illumina reads—includes QC, mapping, variant calling, consensus generation, lineage annotation, and phylogenetics.

genome-assembly illumina sars-cov-2 variantcalling

Last synced: 03 Jul 2025