https://github.com/jhsmit/ipymolstar

PDBeMolstar as anywidget

anywidget molstar pdbe

Last synced: 15 Apr 2025

https://github.com/jhsmit/pyhdx

Derive ΔG for single residues from HDX-MS data

hdx-ms protein-dynamics protein-structure

Last synced: 17 Aug 2025

https://github.com/jhsmit/colicoords

Single-cell fluorescence microscopy data analysis

fluorescence-microscopy-imaging microscopy

Last synced: 14 Apr 2025

https://github.com/Jhsmit/ColiCoords

Single-cell fluorescence microscopy data analysis

fluorescence-microscopy-imaging microscopy

Last synced: 07 May 2025

https://github.com/jhsmit/pymagej

Python tools for ImageJ

Last synced: 08 Mar 2026

https://github.com/jhsmit/hdxrate

Calculate protein amide hydrogen exchange rate

hdx-ms

Last synced: 15 Apr 2025

https://github.com/jhsmit/dont-fret

Don't FRET: A python webserver for confocal smFRET burst search

Last synced: 02 Jul 2025

https://github.com/jhsmit/lumflux

Illuminating web applications.

Last synced: 04 Apr 2025

https://github.com/jhsmit/ipymolstar-demo

jupyterlite demo of ipymolstar

Last synced: 04 Apr 2025

https://github.com/jhsmit/hdxms-datasets

Download and parse curated HDX-MS datasets

Last synced: 15 Apr 2025

https://github.com/jhsmit/colicoords-paper

Code for ColiCoords paper

Last synced: 18 Jun 2026

https://github.com/jhsmit/hdx-ms-datasets

Repository for HDX-MS datasets

Last synced: 20 Jan 2026

https://github.com/jhsmit/ploomber-solara-ipymolstar

ipymolstar solara demo deployed to ploomber

Last synced: 27 Feb 2026

https://github.com/jhsmit/param_docs

Example of param sphinx docstrings

Last synced: 10 Aug 2025

https://github.com/jhsmit/instagibbs

Instant Gibbs free energies from HDX-MS data

Last synced: 21 May 2026

https://github.com/jhsmit/t3ss-paper

Code for processing of live-cell microscopy data in Yuan 2021 paper

Last synced: 04 Apr 2025

https://github.com/jhsmit/smitfit

S.M.I.T.F.I.T. Symbolic Model Integration Tool For Inference Tasks

Last synced: 01 Nov 2025

https://github.com/jhsmit/pyhdx-paper

Code to generate figures for the PyHDX paper

Last synced: 04 Apr 2025

https://github.com/jhsmit/smitsuite

Various tricks and tools to make life easier

Last synced: 26 Jun 2025

https://github.com/jhsmit/academic-blox

Personal website v2

Last synced: 04 Apr 2025

https://github.com/jhsmit/atomicplot

New implementation of atomicplot

Last synced: 27 Feb 2025

https://github.com/jhsmit/website_quarto

Personal webpage

Last synced: 04 Apr 2025

https://github.com/jhsmit/cookiecutter-reproducible-analysis

Cookiecutter for creating a project structure facilitating reproducible analysis

Last synced: 24 Oct 2025

https://github.com/jhsmit/param_mkdocs

mkdocs docstrings for param

Last synced: 30 Oct 2025

https://github.com/jhsmit/academic-kickstart

Last synced: 08 Feb 2026

https://github.com/jhsmit/slimfit

Symfit's little brother

Last synced: 26 Feb 2026

https://github.com/jhsmit/secb_mbp_hdxms

Analysis of SecB/MBP folding HDX-MS data

Last synced: 16 Feb 2026