Projects in Awesome Lists by OpenMendel
A curated list of projects in awesome lists by OpenMendel .
https://github.com/openmendel/mendelimpute.jl
OpenMendel package for haplotyping and imputation
Last synced: 28 Feb 2026
https://github.com/openmendel/mendeliht.jl
Iterative hard thresholding for l0 penalized regression
genetic-algorithms glm gwas julia model-selection multivariate multivariate-regression regression sparse-linear-solver sparsity
Last synced: 12 Apr 2025
https://github.com/openmendel/ordinalgwas.jl
Genome-wide association studies (GWAS) for ordered categorical phenotypes
gwas ordered-multinomial-models proportional-odds-regression
Last synced: 20 Mar 2025
https://github.com/openmendel/vcftools.jl
Julia utilities for handling VCF files
Last synced: 27 Oct 2025
https://github.com/openmendel/openmendel.github.io
The main website for the OpenMendel project.
Last synced: 20 Mar 2025
https://github.com/openmendel/ordinalmultinomialmodels.jl
ordered multinomial models
proportional-hazard-test proportional-odds-regression
Last synced: 16 Jun 2025
https://github.com/openmendel/mendelplots.jl
Julia package for plotting results from GWAS
gwas julia manhattan-plot qqplot
Last synced: 12 Apr 2025
https://github.com/openmendel/wiser.jl
Within-subject variance estimation by robust regression (WiSER)
Last synced: 20 Mar 2025
https://github.com/openmendel/variancecomponentmodels.jl
Utilities for fitting and testing variance component models
gcta genetic-heritability julia openmendel variance-component
Last synced: 12 Apr 2025
https://github.com/openmendel/ashg-openmendelworkshop-2020-oct
OpenMendel tutorials for ASHG Workshop
Last synced: 20 Mar 2025
https://github.com/openmendel/admixture.jl
Julia wrapper of the ADMIXTURE program for estimating ancestry
Last synced: 20 Mar 2025
https://github.com/openmendel/mendelgwas.jl
This package performs standard Genome-wide Association Studies.
Last synced: 18 Aug 2025
https://github.com/openmendel/mendelbase.jl
MendelBase contains the base functions of OpenMendel.
Last synced: 21 Aug 2025
https://github.com/openmendel/langesymposium-programmingworkshop-20202022
OpenMendel tutorials for Lange's Symposium Programming Workshop
lange-symposium openmendel-tutorials ucla
Last synced: 20 Mar 2025
https://github.com/openmendel/geneticcounseling_ashg2019
Tutorials and data sets for ASHG 2019 workshop on Genetic Counseling.
Last synced: 04 Mar 2026
https://github.com/openmendel/codingstyle
Coding style guidelines for OpenMendel packages
Last synced: 20 Mar 2025
https://github.com/openmendel/traitsimulation.jl
Simulate phenotypes from any GLM model
Last synced: 08 Aug 2025
https://github.com/openmendel/mendellocationscores.jl
This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.
Last synced: 04 Jan 2026
https://github.com/openmendel/mendeltwopointlinkage.jl
This analysis option performs two-point linkage analysis.
Last synced: 20 Mar 2025
https://github.com/openmendel/mendelgeneticcounseling.jl
This analysis option performs risk calculations for genetic counseling problems.
Last synced: 27 Jan 2026
https://github.com/openmendel/mendelsearch.jl
MendelSearch is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.
Last synced: 20 Mar 2025
https://github.com/openmendel/classicmendel
Official Mendel package distribution
Last synced: 19 Mar 2026
https://github.com/openmendel/mendelgametecompetition.jl
This analysis option implements a gamete competition analysis, which is a generalization of the TDT analysis.
Last synced: 20 Mar 2025
https://github.com/openmendel/mendelgenedropping.jl
This package performs gene dropping with several useful options for the output.
Last synced: 01 Jul 2025
https://github.com/openmendel/mendelestimatefrequencies.jl
This analysis option calculates a likelihood-based estimate of allele frequencies.
Last synced: 20 Mar 2025
https://github.com/openmendel/mendelkinship.jl
This analysis option computes kinship and other identity coefficients.
Last synced: 20 Mar 2025
https://github.com/openmendel/mendelaimselection.jl
This analysis option selects the SNPs that are most informative at predicting ancestry for your data — the best Ancestry Informative Markers (AIMs).
Last synced: 17 Jun 2025
https://github.com/openmendel/approxcopula.jl
A Flexible Quasi-Copula Distribution for Statistical Modeling
Last synced: 11 Dec 2025
https://github.com/OpenMendel/ApproxCopula.jl
A Flexible Quasi-Copula Distribution for Statistical Modeling
Last synced: 07 Oct 2025
https://github.com/openmendel/regressiontests
Collection of test cases for OpenMendel framework
Last synced: 04 Jan 2026