Projects in Awesome Lists by SCAI-BIO
A curated list of projects in awesome lists by SCAI-BIO .
https://github.com/scai-bio/step
Data and code for STEP (Siamese Twin deep sequence Embedding of Proteins) approach.
Last synced: 30 Apr 2025
https://github.com/scai-bio/datastew
Python library for intelligent data stewardship using Large Language Model (LLM) embeddings
data-harmonization data-stewardship large-language-models
Last synced: 30 Apr 2025
https://github.com/scai-bio/tsnepad
AD & PD cohort variable distributions
alzheimers-disease data-harmonization parkinsons-disease t-sne visualization
Last synced: 30 Apr 2025
https://github.com/scai-bio/index
Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization
data-harmonization data-stewardship embeddings large-language-models semantic-mapping
Last synced: 30 Mar 2025
https://github.com/scai-bio/kitsune
Kitsune is a next-generation data steward and harmonization tool.
data-harmonization data-stewardship embeddings large-language-models semantic-mapping
Last synced: 30 Apr 2025
https://github.com/scai-bio/pdataviewer
Parkinsons Disease cohort landscape visualization
cohort-selection common-data-model parkinsons-disease visualization
Last synced: 30 Apr 2025
https://github.com/scai-bio/web-of-clint
web of public health intelligence data tooling
anomaly detection semantic web
Last synced: 30 Mar 2025
https://github.com/scai-bio/helm-upgrade-actions
Template to automatically build & deploy services to Kubernetes (k8s) using helm and github actions
docker github-actions helm helm-charts k8s
Last synced: 30 Mar 2025
https://github.com/scai-bio/cv-extraction
Web-Tool for LLM based CV extraction
Last synced: 30 Mar 2025
https://github.com/scai-bio/ad-mapper
alzheimers-disease common-data-model data-harmonization
Last synced: 30 Mar 2025
https://github.com/scai-bio/syndat
Synthetic data quality evaluation & visualization
Last synced: 30 Mar 2025
https://github.com/scai-bio/tau-kg-benchmarking-gpt
Benchmarking the performance of GPT-based LLMs against human curated Tau KG from Human Brain Pharmacome (HBP)
Last synced: 30 Mar 2025
https://github.com/scai-bio/ollama-docker
Pre-build docker containers for different LLMs using Ollama
Last synced: 22 Mar 2025
https://github.com/scai-bio/mirna-disease-association-detection
MiRNA-disease association detection through text mining methods.
Last synced: 30 Mar 2025
https://github.com/scai-bio/causal-npi-effects
A causal machine learning framework to assess effects of non-pharmaceutical interventions on pandemic disease spread.
Last synced: 30 Mar 2025
https://github.com/scai-bio/multinodes_newimplementation
MultiNODEs New Implementation
Last synced: 30 Mar 2025
https://github.com/scai-bio/owl-tooling
Helpers for importing OWL files, reasoning over OWL files, etc.
Last synced: 30 Mar 2025
https://github.com/scai-bio/adr-detection-with-knowledge-fusion
ADR Deteciton with Knowledge Fusion Approaches
Last synced: 30 Mar 2025
https://github.com/scai-bio/zetomap
An AOP network visualizer and prediction tool for the ZET-O-MAP project.
Last synced: 30 Mar 2025
https://github.com/scai-bio/pytmle
A Flexible Python Implementation of Targeted Estimation for Survival and Competing Risks Analysis
Last synced: 16 May 2025
https://github.com/scai-bio/cbm-comorbidity-kg
a manually curated, comorbidity-centric knowledge graph linking COVID-19 to neurodegenerative diseases
Last synced: 16 May 2025
https://github.com/scai-bio/pd-diagnostic-delay
Parkinson's disease diagnostic delay analysis
Last synced: 08 Apr 2025
https://github.com/scai-bio/dynamic_ensemble
A Dynamic Ensemble Model for short-term Forecasting in Pandemic Situations
Last synced: 30 Mar 2025
https://github.com/scai-bio/covid-ndd-comorbidity-nlp
This work aims to integrate diverse, curated biological databases with a comprehensive analysis of the growing body of literature on the potential long-term neurological consequences of COVID-19 infections, employing advanced natural language processing and text mining techniques.
Last synced: 30 Mar 2025
https://github.com/scai-bio/seeds
SEEDS (Similarity based Expert Embedding Decision System) is a Retrieval-Augmented Generation (RAG) based agricultural question-answering (QA) system. It is built upon a domain-specific knowledge graph (KG), representing Cedar Apple Rust disease.
Last synced: 30 Mar 2025
https://github.com/scai-bio/mmpk-sciml
Official implementation of the paper Scientific Machine learning for predicting plasma concentrations in anti-cancer therapy
Last synced: 30 Mar 2025
https://github.com/scai-bio/bipolar-disorder-ontology
Bipolar Disorder Ontology
Last synced: 30 Mar 2025
https://github.com/scai-bio/tau-kg-extension-nlp
Extending the Tau subgraph within the pharmacome using NLP.
Last synced: 30 Mar 2025
https://github.com/scai-bio/transformers-for-german-biomedical-nlp
Transformer models for German biomedical NLP.
Last synced: 30 Mar 2025