https://github.com/ccdmb/predector

Effector prediction pipeline based on protein properties.

Last synced: 08 Apr 2026

https://github.com/ccdmb/catastrophy

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

bioinformatics fungi pathogen pathogenomics trophic-interactions

Last synced: 08 Apr 2026

https://github.com/ccdmb/slurm_scripts

SLURM script collection

Last synced: 08 Apr 2026

https://github.com/ccdmb/barley-pow-rnaseq

Barley Baudin and Palace NIL RNAseq analysis during powdery mildew infection

Last synced: 08 Apr 2026

https://github.com/ccdmb/predector-data

Datasets used for developing the predector pipeline

Last synced: 08 Apr 2026

https://github.com/ccdmb/nanopore_assembly

Last synced: 08 Apr 2026

https://github.com/ccdmb/wheat-agr-tanspot

RNA-seq analysis of wheat AGR during tan spot infection

Last synced: 08 Apr 2026

https://github.com/ccdmb/ptr-60

PTR gene analysis for race 2 and 4 isolates PacBio sequenced

Last synced: 08 Apr 2026

https://github.com/ccdmb/ccdmb.github.io

Front page for the CCDM bioinformatics group.

Last synced: 08 Apr 2026

https://github.com/ccdmb/effectorfisher-core

🧬 EffectorFisher links pangenome isoforms to disease traits to predict phenotype-associated effectors. 🌾🦠

Last synced: 08 Apr 2026

https://github.com/ccdmb/predector-utils

Utilities for running the predector pipeline.

Last synced: 08 Apr 2026

https://github.com/ccdmb/20200306-pnodorum_pangenome_pseudocode

Code accompanying an upcoming manuscript on a P. nodorum pangenome.

Last synced: 08 Apr 2026

https://github.com/ccdmb/r_script_templates

Example templates for bioinformatics analyses

rstudio

Last synced: 08 Apr 2026

https://github.com/ccdmb/pathopore

PathoPore - Longer Sequences and NextFlow Faster Analysis

nanopore nextflow-pipeline pathogens

Last synced: 08 Apr 2026