Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by corneliusroemer
A curated list of projects in awesome lists by corneliusroemer .
https://github.com/corneliusroemer/desh-data
Sequence lineage information extracted from RKI sequence data repo
dataset germany lineages pangolin robert-koch-institut sars-cov-2 sequencing
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/pango_aliasor
Utility to alias and dealias pango lineages
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/pango-sequences
Consensus sequences for each Pango lineage
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/mutantenprognose
Covid Prognosen für Deutschland
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/pango-designation-dates
Contains dates on which each Pango lineage was designated
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/autovpn
Automatically connect to Cisco Anyconnect VPN from CLI
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/rki-plots
Plots of Covid case numbers according to German public health institute
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/covspectrum-jupyter
Make interactive plots from covSpectrum data
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/nwk-formatter
Formatting newick trees for manual editing
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/nextstrain-deploy
Deploy nextstrain builds from local/staging to staging/production
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/snakemake-boilerplate
Boilerplate for Snakemake workflow
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/rki-abwasser-reports
Easy to view version of RKI SARS-CoV-2 wastewater surveillance reports
public-health-surveillance robert-koch-institut sars-cov-2 sars-cov-2-variants wastewater-surveillance
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/minimizer
Rust implementation of a minimizer index
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/pango-to-internal
Reconstruct pango lineage at nodes from subset of designated tips
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/dependabot-ghactions-test
To test dependabot support for Github actions
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/nearest-neighbour-sequence
Calculate shared mutation count based on nextclade.tsv
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/polars-scripts
Collection of polars scripts
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/nextclade-pango-eval
Evaluation of the Nextclade pango classifier
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/scicore-crontab
Backup of scicore crontab
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/seed-matching-experiment
Seed matching experiment for Nextclade
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/snakemake-tips
General snakemake tips not covered in official docs
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/impfmodell
Bayesian modelling of German first vax rates over time
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/lnav-custom-config
My custom lnav formats
Last synced: 14 Oct 2024
https://github.com/corneliusroemer/alignment-ref-construction
Creating alignment references in different coordinates
Last synced: 14 Oct 2024