Projects in Awesome Lists by dmis-lab

https://github.com/dmis-lab/biobert

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Last synced: 20 Dec 2024

https://github.com/dmis-lab/biobert-pytorch

PyTorch Implementation of BioBERT

Last synced: 16 Dec 2024

https://github.com/dmis-lab/bern2

BERN2: an advanced neural biomedical namedentity recognition and normalization tool

biomedical-text-mining

Last synced: 18 Dec 2024

https://github.com/dmis-lab/bern

A neural named entity recognition and multi-type normalization tool for biomedical text mining

api bert biomedical-text-mining named-entity-linking named-entity-recognition overlapped-entities-resolving

Last synced: 18 Dec 2024

https://github.com/dmis-lab/biosyn

ACL'2020: Biomedical Entity Representations with Synonym Marginalization

Last synced: 19 Dec 2024

https://github.com/dmis-lab/hats

HATS: A Hierarchical Graph Attention Network for Stock Movement Prediction

Last synced: 23 Nov 2024

https://github.com/dmis-lab/bioasq-biobert

Pre-trained Language Model for Biomedical Question Answering

Last synced: 23 Nov 2024

https://github.com/dmis-lab/gener

Simple Questions Generate Named Entity Recognition Datasets (EMNLP 2022)

dataset named-entity-recognition ner nlp

Last synced: 23 Nov 2024

https://github.com/dmis-lab/kitchenette

KitcheNette: Predicting and Recommending Food Ingredient Pairings using Siamese Neural Networks

artificial-intelligence artificial-neural-networks food-pairing food-recommendation score-prediction siamese-neural-network

Last synced: 23 Nov 2024

https://github.com/dmis-lab/covidask

covidAsk: Answering Questions on COVID-19 in Real-Time

Last synced: 23 Nov 2024

https://github.com/dmis-lab/biolama

EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?

Last synced: 23 Nov 2024

https://github.com/dmis-lab/olaph

OLAPH: Improving Factuality in Biomedical Long-form Question Answering

biomedical-research factuality hallucination question-answering

Last synced: 23 Nov 2024

https://github.com/dmis-lab/resimnet

Implementation of ReSimNet for drug response similarity prediction

Last synced: 23 Nov 2024

https://github.com/dmis-lab/perceivercpi

Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction

Last synced: 23 Nov 2024

https://github.com/dmis-lab/excord

Learn to Resolve Conversational Dependency: A Consistency Training Framework for Conversational Question Answering (Kim et al., ACL 2021)

Last synced: 23 Nov 2024

https://github.com/dmis-lab/position-bias

EMNLP'2020: Look at the First Sentence: Position Bias in Question Answering

biases question-answering

Last synced: 23 Nov 2024

https://github.com/dmis-lab/tour

Findings of ACL'2023: Optimizing Test-Time Query Representations for Dense Retrieval

Last synced: 23 Nov 2024

https://github.com/dmis-lab/nesa

NESA: Neural Event Scheduling Assistant

calendar event neural-network pytorch scheduling

Last synced: 23 Nov 2024

https://github.com/dmis-lab/tbinet

TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism

Last synced: 23 Nov 2024

https://github.com/dmis-lab/demographic-prediction

Predicting Multiple Demographic Attributes with Task Specific Embedding Transformation and Attention Network

Last synced: 23 Nov 2024

https://github.com/dmis-lab/liquid

LIQUID: A Framework for List Question Anwering Dataset Generation (AAAI 2023)

bioasq nlp question-answering question-generator

Last synced: 23 Nov 2024

https://github.com/dmis-lab/self-biorag

ISMB/ECCB'24 "Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models"

Last synced: 23 Nov 2024

https://github.com/dmis-lab/vaecox

ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data

cox-regression deep-learning pan-cancer-data survival-prediction tcga transfer-learning

Last synced: 23 Nov 2024

https://github.com/dmis-lab/moable

Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding

pytorch

Last synced: 23 Nov 2024

https://github.com/dmis-lab/arkdta

Last synced: 23 Nov 2024

https://github.com/dmis-lab/conner

Bioinformatics'2023: Consistency Enhancement of Model Prediction on Document-level Named Entity Recognition

biomedical-named-entity-recognition conner consistency consistency-models named-entity-recognition

Last synced: 23 Nov 2024

https://github.com/dmis-lab/bioasq8b

Transferability of Natural Language Inference to Biomedical Question Answering

Last synced: 23 Nov 2024

https://github.com/dmis-lab/seqtagqa

Sequence Tagging for Biomedical Extractive Question Answering (Bioinformatics'2020)

bioasq question-answering

Last synced: 23 Nov 2024

https://github.com/dmis-lab/advsr

Adversarial Subword Regularization forRobust Neural Machine Translation

Last synced: 23 Nov 2024

https://github.com/dmis-lab/compact

CompAct: Compressing Retrieved Documents Actively for Question Answering

compression question-answering

Last synced: 23 Nov 2024

https://github.com/dmis-lab/mulinforcpi

MulinforCPI: enhancing precision of compound-protein interaction prediction through novel perspectives on multi-level information integration

Last synced: 23 Nov 2024

https://github.com/dmis-lab/kazu-ner-module

EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework

Last synced: 23 Nov 2024

https://github.com/dmis-lab/recipemind

RecipeMind: Guiding Ingredient Choices from Food Pairing to Recipe Completition using Cascaded Set Transformer (Mogan Gim et al., 2022)

artificial-intelligence food-computing

Last synced: 23 Nov 2024

https://github.com/dmis-lab/bc7-chem-id

DMIS at BioCreative VII NLMChem Track

bionlp ner normalization

Last synced: 23 Nov 2024