Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by fomightez
A curated list of projects in awesome lists by fomightez .
https://github.com/fomightez/dataframe2summary
Repo for demonstrating scripts that convert dataframes / data tables into summarized dataframes / data tables.
Last synced: 28 Dec 2024
https://github.com/fomightez/bvcn-jupyter_base
JupyterLab 2.0 with offlinenotebook safety net and Visual Debugger for use via MyBInder.org by BVCN
Last synced: 28 Dec 2024
https://github.com/fomightez/bokeh-binder
bokeh plots working in active Jupyter environment served by Binder service.
Last synced: 28 Dec 2024
https://github.com/fomightez/dockerfile-rstudio
to test building from a dockerfile presently
Last synced: 28 Dec 2024
https://github.com/fomightez/general_scripted_plotting
Scripts that make plots of generalized data.
matplotlib matplotlib-figures python
Last synced: 28 Dec 2024
https://github.com/fomightez/bigdft-binder
binderized Bigdft stuff - see https://stackoverflow.com/a/78868235/8508004
Last synced: 28 Dec 2024
https://github.com/fomightez/humap2-binder
Using data from hu.MAP 2.0 with the convenience of Python and Jupyter.
Last synced: 27 Nov 2024
https://github.com/fomightez/cnssolve1pt21_docker
Dockerfile to build images that will compile CNSsolve 1.21.
Last synced: 28 Dec 2024
https://github.com/fomightez/humap3-binder
Using data from hu.MAP 3.0 with the convenience of Python and Jupyter.
bioinformatica-pipeline bioinformatics bioinformatics-analysis bioinformatics-scripts genomics pandas pandas-dataframe protein-sequences protein-structure python
Last synced: 28 Dec 2024
https://github.com/fomightez/ffmpeg-python-binder
Based on idea [here](https://github.com/kkroening/ffmpeg-python/issues/147#issue-388764410).
Last synced: 28 Dec 2024
https://github.com/fomightez/voici-demotestmay24
Demo of Voici (Voila/JupyterLite) based on the demo repo as it existed in May 2024
Last synced: 28 Dec 2024
https://github.com/fomightez/cufflinks_docker
Docker container for Cufflinks for Transcriptome assembly and differential expression analysis for RNA-Seq
Last synced: 28 Dec 2024
https://github.com/fomightez/uscad16
Upstate Summer Career Awareness 2016 Exercise
Last synced: 28 Dec 2024
https://github.com/fomightez/millefy-binder
Millefy tool by Ozaki et al. 2020 packaged so it works in launches via MyBinder.org.
Last synced: 28 Dec 2024
https://github.com/fomightez/testjmol
testing hosting page using jmol 14.1.6 on my github.io / gh-pages site ; jmol 14.1.6 downloaded from http://chemapps.stolaf.edu/jmol/jsmol/test2.htm . Link to test page is --->
Last synced: 28 Dec 2024
https://github.com/fomightez/drag_legends-binder
Notebook to demonstrate draggable legends in Matplotlib.
Last synced: 28 Dec 2024
https://github.com/fomightez/clausen_ribonucleotides
Analyze ribonucleotide incorporation data from Clausen et al. 2015 data using script `plot_5prime_end_from_bedgraph.py`.
Last synced: 28 Dec 2024
https://github.com/fomightez/modelit-binder
Model.it software to produce a 3D model of DNA in bent confirmation combined with Jupyter ecosystem and PyMOL served via MyBinder.org
Last synced: 28 Dec 2024
https://github.com/fomightez/ranked_list_comparison_demo
A notebook to demonstrate a function for comparing ranked lists.
Last synced: 28 Dec 2024
https://github.com/fomightez/bioptools-binder
bioptools available in Jupyter session served via myBinder.org
Last synced: 28 Dec 2024
https://github.com/fomightez/ptmbr-accompmatz
Accompanying material for my patmatch-binder repo
Last synced: 28 Dec 2024
https://github.com/fomightez/mayfourteenth_slides
slides for ChIP-seq hands-on workshop for Feng Lab group meeting
Last synced: 28 Dec 2024
https://github.com/fomightez/yeast_snornas
scripts and files for accounting for yeast snoRNAs among a gene list
Last synced: 28 Dec 2024
https://github.com/fomightez/jupyter_hide_code
Jupyter working via MyBinder with hide_code enabled.
Last synced: 28 Dec 2024
https://github.com/fomightez/orca-plotly-binderized
Run Plotly's Orca on MyBinder without a Dockerfile
Last synced: 28 Dec 2024
https://github.com/fomightez/jupyterlite-xeus-demo
JupyterLite but with the Xeus-Python kernel so can pre-install packages, mainly at this time to demonstrate sidecar will work
Last synced: 28 Dec 2024
https://github.com/fomightez/may2015feng_gr_m
May 2015 hands-on workshop on ChIP-seq for Feng Lab group meeting
Last synced: 28 Dec 2024
https://github.com/fomightez/animatepymolwithjmol
Easily animate PyMOL session scenes with Jmol to create an animated GIF.
Last synced: 28 Dec 2024
https://github.com/fomightez/jupyter-rise-r
Jupyter-RISE with an R kernel available.
Last synced: 28 Dec 2024
https://github.com/fomightez/unipressed-binder
Unipressed examples that run in MyBinder-based sessions to illustrate use of Unipressed to query Uniprot.
Last synced: 28 Dec 2024
https://github.com/fomightez/mcscan-blast-binder
MCscan software and command line-based BLAST available in a Jupyter environment running via the Binder service
Last synced: 28 Dec 2024
https://github.com/fomightez/jupyter-jsmol-binder
jupyter-jsmol extension running in my own repo served by MyBinder.org
Last synced: 28 Dec 2024
https://github.com/fomightez/animated_matplotlib-binder
Notebook to demonstrate animated plots with Matplotlib in JupyterLab and Jupyter Notebook 7+ served via MBinder system.
Last synced: 28 Dec 2024
https://github.com/fomightez/jupyter-desktop_with_pymol_plus_extensions
Jupyter-Desktop with PyMOL installed, with some extensions added.
Last synced: 28 Dec 2024
https://github.com/fomightez/hre_sewage_microbiome
Analysis of Hudson River Estuary microbiome dataset for assessing dynamics of sewage contamination
Last synced: 28 Dec 2024
https://github.com/fomightez/marnineteenth_slides
slides for presentation for Feng Lab group meeting
Last synced: 28 Dec 2024
https://github.com/fomightez/janfifteenth_slides
slides for January 15th Introduction to Python
Last synced: 28 Dec 2024
https://github.com/fomightez/rcondatestoct
rconda as template test October 2023
Last synced: 28 Dec 2024
https://github.com/fomightez/cluster_analysis-binder
Demonstrating various clustering algorithms in Python, all provided actively useable via MyBinder.org.
Last synced: 28 Dec 2024
https://github.com/fomightez/imgs2riseslides
Takes images and makes individual RISE slides from pairs of the images.
Last synced: 28 Dec 2024
https://github.com/fomightez/upstategs647-021nanocourse
Upstate Medical GS647-021 Nanocourse: Structuring against Coronavirus
Last synced: 28 Dec 2024
https://github.com/fomightez/genomeview-binder
Attempt to binderize https://github.com/nspies/genomeview, An extensible python-based genomics visualization engine
Last synced: 28 Dec 2024
https://github.com/fomightez/blast29-binder
Repo for running command line-based BLASTv2.9 in Jupyter environment provided via Binder.
Last synced: 28 Dec 2024
https://github.com/fomightez/gohugo-binder
Go-based static site generator HUGO running via binder served sessions.
Last synced: 28 Dec 2024
https://github.com/fomightez/spartan_fixer
fixes SPARTAN08 output in so-called PDB format to be true PDB format
Last synced: 28 Dec 2024
https://github.com/fomightez/retreat16
links and resources for Jupyter Notebook and how to launch active notebooks from a poster presented at Upstate's Biomedical Sciences Retreat 2016
Last synced: 28 Dec 2024
https://github.com/fomightez/testruntimeandreqs
testing binder where have runtime and requirements.txt
Last synced: 28 Dec 2024
https://github.com/fomightez/rcomptest-accompmatz
content for recomp_testenv repo
Last synced: 28 Dec 2024
https://github.com/fomightez/xlmod_docker
Dockerfile to build images that will run XL-MOD in modified CNS 1.21.
Last synced: 28 Dec 2024
https://github.com/fomightez/stat0019_binder
This repo is used to create a fully functional Rstudio environment for computation see https://discourse.jupyter.org/t/binder-from-github-dockerfile-not-starting-rstudio/7986/4?u=fomightez
Last synced: 28 Dec 2024