Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by ggonnella
A curated list of projects in awesome lists by ggonnella .
https://github.com/ggonnella/gfapy
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
assembly bioinformatics gfa graphs sequence-analysis
Last synced: 18 Jan 2025
https://github.com/ggonnella/gfaviz
Graphical interactive tool for the visualization of sequence graphs in GFA format.
Last synced: 16 Nov 2024
https://github.com/ggonnella/fastsubtrees
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
bioinformatics ncbi-taxonomy python subtree subtree-extraction subtree-query taxonomy tree
Last synced: 16 Nov 2024
https://github.com/ggonnella/attrtables
System for storing, a dynamic set of entity attributes in a database
Last synced: 16 Nov 2024
https://github.com/ggonnella/attr_hidden
Rails / ActiveRecord - Hide attributes in a model (particularly useful for Single Table Inheritance)
Last synced: 16 Jan 2025
https://github.com/ggonnella/boxover_helper
A rails helper to make easier to use boxover javascript library (http://boxover.swazz.org)
Last synced: 16 Jan 2025
https://github.com/ggonnella/rgfatools
(code moved to https://github.com/ggonnella/rgfa)
Last synced: 16 Jan 2025
https://github.com/ggonnella/egcwebapp
A web application for visualizing and editing EGC data
Last synced: 16 Jan 2025
https://github.com/ggonnella/prenacs
Batch computing and results storage system with provenance-tracking
Last synced: 16 Jan 2025
https://github.com/ggonnella/multiplug
Flexible multi-language plugin system for Python
Last synced: 15 Dec 2024
https://github.com/ggonnella/ec_finder
EcFinder: Python library and script to fuzzy search an enzyme EC number from an enzyme name
Last synced: 16 Jan 2025
https://github.com/ggonnella/snacli
Simplify writing dual use scripts for CLI and Snakemake
Last synced: 16 Jan 2025
https://github.com/ggonnella/ruby_progress_bar
a simple progress bar to give some feedback in console based ruby scripts
Last synced: 16 Jan 2025
https://github.com/ggonnella/expectation_rules
A collection of expectations about the contents of prokaryotic genomes
Last synced: 16 Jan 2025
https://github.com/ggonnella/egcgpt
Extract rules about the contents of prokaryotic genomes from scientific literature using GPT
Last synced: 16 Jan 2025
https://github.com/ggonnella/egctools
Tools for handling the Expected Genome Content (EGC) Format
Last synced: 16 Jan 2025
https://github.com/ggonnella/egc-spec
Specification for the Expected Genome Content format
Last synced: 16 Jan 2025
https://github.com/ggonnella/pgcdo
Prokaryotic Genome Contents Definition Ontology
Last synced: 16 Jan 2025
https://github.com/ggonnella/urischemes
generating custom URI scheme handlers and install them
Last synced: 16 Jan 2025
https://github.com/ggonnella/findconfig
Find a config file in XDG config paths, home directory or directories of the calling package
Last synced: 16 Jan 2025
https://github.com/ggonnella/ntmirror
Local database mirroring NCBI taxonomy, kept up-to-date
Last synced: 16 Jan 2025
https://github.com/ggonnella/ggonnella.github.io
GGGbG - Giorgio Gonnella's Github bloG
Last synced: 16 Jan 2025
https://github.com/ggonnella/bfa
BFA, draft proposal of a binary GFA-like format
Last synced: 16 Jan 2025
https://github.com/ggonnella/lexpr
Lexpr: A simple logical expressions Lark-based parser
Last synced: 16 Jan 2025
https://github.com/ggonnella/quick-notes
Write synchronized single-lined notes from the command line
Last synced: 16 Jan 2025
https://github.com/ggonnella/tabrec
Scripts for working with multiple record-type tabular files
Last synced: 16 Jan 2025
https://github.com/ggonnella/git-batch-op
allows to run git repository operations on a group of repositories
Last synced: 16 Jan 2025
https://github.com/ggonnella/giosc
R package with helper functions for ScRNA-seq analysis
Last synced: 16 Jan 2025
https://github.com/ggonnella/fardes
Features Arrangement Description Miniformat
Last synced: 16 Jan 2025