Projects in Awesome Lists tagged with ncbi-taxonomy
A curated list of projects in awesome lists tagged with ncbi-taxonomy .
https://github.com/zyxue/ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
lineage ncbi ncbi-taxonomy pandas python taxdump taxonomy
Last synced: 09 Apr 2025
https://github.com/bio4j/bio4j
Bio4j abstract model and general entry point to the project
bio4j bio4j-titan bioinformatics database gene-ontology graph graph-data graph-database graph-databases graph-queries graph-schema java java-8 ncbi-taxonomy property-graph protein proteins titan uniprot uniref
Last synced: 10 Apr 2025
https://github.com/seqan/lambda
LAMBDA – the Local Aligner for Massive Biological DatA
alignment bioinformatics blast blast-searches high-performance metagenomics ncbi-taxonomy protein-sequences seqan
Last synced: 28 Feb 2025
https://github.com/ggonnella/fastsubtrees
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
bioinformatics ncbi-taxonomy python subtree subtree-extraction subtree-query taxonomy tree
Last synced: 14 Apr 2025
https://github.com/suvash/taxophoney
GPT (Decoder only Transformer - from scratch) generated fake/phoney taxonomies (based on NCBI taxonomy dataset)
generative-model gpt ncbi-taxonomy taxonomy transformer transformer-decoder
Last synced: 22 Feb 2025
https://github.com/tracywong117/autosuggest-words
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
autocomplete autocomplete-search ncbi ncbi-taxonomy sqlite3 tkinter-gui
Last synced: 12 Mar 2025
https://github.com/tracywong117/ncbi-get-all-children-organism-under-ancestor
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
bio-data bio-dataset dataset ncbi ncbi-database ncbi-sra ncbi-taxonomy taxonomy-database
Last synced: 12 Mar 2025