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Projects in Awesome Lists by int-brain-lab

A curated list of projects in awesome lists by int-brain-lab .

https://github.com/int-brain-lab/ibllib

IBL core shared libraries

Last synced: 16 Nov 2024

https://github.com/int-brain-lab/mtscomp

Multichannel time series lossless compression in pure Python based on NumPy and zlib

compression electrophysiology neurophysiology numpy python zlib

Last synced: 23 Dec 2024

https://github.com/int-brain-lab/iblapps

pyqt5 dependent applications for IBL sessions

Last synced: 16 Nov 2024

https://github.com/int-brain-lab/iblrig

Main repository for IBL rig code

Last synced: 16 Nov 2024

https://github.com/int-brain-lab/ibl-pipeline

DataJoint pipeline for IBL project

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/one

Open Neurophysiology Environment

Last synced: 18 Dec 2024

https://github.com/int-brain-lab/ibl-neuropixel

Collection of tools to handle Neuropixel 1.0 and 2.0 data

Last synced: 16 Nov 2024

https://github.com/int-brain-lab/paper-behavior

The International Brain Laboratory et al. (2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv, 909838

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/paper-brain-wide-map

Code related to the brainwide map paper

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblenv

Unified environment and Issue tracker for all IBL

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/analysis

Initial repo for behavioral analyses

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblviewer

Interactive visualization tool for multiple volumes, meshes and points based on VTK. The app can be controlled with Python scripts (optionally headless), with a Qt UI & dynamic statistics or with Jupyter.

jupyter neuroscience python qt scientific-visualization visualization

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ann-rnns

Train ANN-RNNs to perform the IBL task and then dissect them.

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/spikes_localization_registration

Spike Sorting Utilities

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/neuropixels_course_2024

Resources for the IBL portion of the UCL Neuropixels Course 2024

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblvideo

Pose estimation for the IBL dataset

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/nma-ibl

Materials for NeuroMatchAcademy workshop for IBL data pipeline access

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/atlas

Brain flatmaps generation

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblscripts

Deployment scripts for ibl

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/prior-localization

Project seeking to localize encoding of the task prior in the brain

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ibllib-matlab

IBL set of Matlab tools and functions

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ibl-changepoint

Toolbox for change-point detection and ideal-observer analyses of IBL task data

change-point-detection matlab model-fitting plotting psychophysics

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ibl-viz

Gallery of visualizations and associated code

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/viewephys

Neuropixel raw data viewer

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/citricacid

Urai AE, Aguillon-Rodriguez V, Laranjeira IC, Cazettes F, The International Brain Laboratory, Mainen ZF & Churchland AK (2021) Citric Acid water as an alternative to water restriction for high-yield mouse behavior. eNeuro, 8(1). doi: 10.1523/ENEURO.0230-20.2020

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ucl_neurodatashare2023

examples of scripts how to use IBL-BWM dataset

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/brainregister

Python package for elastix-based registration of tissues to atlases; with mouse brain registration to the Allen CCFv3 built-in.

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/sorting_analysis

WIP code for analyzing outputs of spike sorters

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/paper-ephys-atlas

Code related to the electrophysiology atlas paper

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblbrainviewer

IBL API for atlas web

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblcourse

Repository containing courses on data usage

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblatlas

IBL atlas module

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ibl-pipeline-light

A light version of IBL pipeline that allows users to access datajoint tables.

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/friendly_neurons

Community Detection for spike data

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/datajoint-tutorial

DataJoint Tutorial for IBL pipeline

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/serial_singleton

A singleton wrapping pyserial's Serial class

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/bwm_dmn

default mode network manifold analysis

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/project_extraction

Extraction code for IBL satellite projects eg. U19 / personal projects

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblqt

A collection of extensions to the Qt framework.

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblpybpod

Mostly a fork of the pybpod without the git submodule structure.

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/website

Public website prototype

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/neuroenv

Repository meant to easily find compatible versions of useful python packages with heavy reliance on Github Actions CI

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ibl-style

Style guidelines for IBL papers

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/ibl-photometry

A collection of methods and tools for experimental photometry data

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/reveal

Tools to build reveal web-based presentations for scientific visualisations

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblutil

Small utilities with minimal dependencies

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/qcapp

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/iblgovernance

IBL governance policies and documents

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/mesoscope

Code related to mesosocope experiments and analysis

Last synced: 08 Nov 2024

https://github.com/int-brain-lab/datajoint-ibl-gitops

DataJoint deployments for IBL's kubernetes cluster. Codebase for IBL Navigator located in: https://github.com/datajoint-company/ibl-navigator.

Last synced: 08 Nov 2024