Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by int-brain-lab
A curated list of projects in awesome lists by int-brain-lab .
https://github.com/int-brain-lab/mtscomp
Multichannel time series lossless compression in pure Python based on NumPy and zlib
compression electrophysiology neurophysiology numpy python zlib
Last synced: 23 Dec 2024
https://github.com/int-brain-lab/iblapps
pyqt5 dependent applications for IBL sessions
Last synced: 16 Nov 2024
https://github.com/int-brain-lab/ibl-pipeline
DataJoint pipeline for IBL project
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ibl-neuropixel
Collection of tools to handle Neuropixel 1.0 and 2.0 data
Last synced: 16 Nov 2024
https://github.com/int-brain-lab/paper-behavior
The International Brain Laboratory et al. (2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv, 909838
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/paper-brain-wide-map
Code related to the brainwide map paper
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblenv
Unified environment and Issue tracker for all IBL
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/analysis
Initial repo for behavioral analyses
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblviewer
Interactive visualization tool for multiple volumes, meshes and points based on VTK. The app can be controlled with Python scripts (optionally headless), with a Qt UI & dynamic statistics or with Jupyter.
jupyter neuroscience python qt scientific-visualization visualization
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ann-rnns
Train ANN-RNNs to perform the IBL task and then dissect them.
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/spikes_localization_registration
Spike Sorting Utilities
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/neuropixels_course_2024
Resources for the IBL portion of the UCL Neuropixels Course 2024
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblvideo
Pose estimation for the IBL dataset
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/nma-ibl
Materials for NeuroMatchAcademy workshop for IBL data pipeline access
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/prior-localization
Project seeking to localize encoding of the task prior in the brain
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ibllib-matlab
IBL set of Matlab tools and functions
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ibl-changepoint
Toolbox for change-point detection and ideal-observer analyses of IBL task data
change-point-detection matlab model-fitting plotting psychophysics
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ibl-viz
Gallery of visualizations and associated code
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/citricacid
Urai AE, Aguillon-Rodriguez V, Laranjeira IC, Cazettes F, The International Brain Laboratory, Mainen ZF & Churchland AK (2021) Citric Acid water as an alternative to water restriction for high-yield mouse behavior. eNeuro, 8(1). doi: 10.1523/ENEURO.0230-20.2020
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ucl_neurodatashare2023
examples of scripts how to use IBL-BWM dataset
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/brainregister
Python package for elastix-based registration of tissues to atlases; with mouse brain registration to the Allen CCFv3 built-in.
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/sorting_analysis
WIP code for analyzing outputs of spike sorters
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/paper-ephys-atlas
Code related to the electrophysiology atlas paper
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblcourse
Repository containing courses on data usage
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ibl-pipeline-light
A light version of IBL pipeline that allows users to access datajoint tables.
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/friendly_neurons
Community Detection for spike data
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/datajoint-tutorial
DataJoint Tutorial for IBL pipeline
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/serial_singleton
A singleton wrapping pyserial's Serial class
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/tycmd-wrapper
A Python wrapper for tycmd
firmware firmware-tools microcontroller python teensy teensy-board
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/bwm_dmn
default mode network manifold analysis
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/project_extraction
Extraction code for IBL satellite projects eg. U19 / personal projects
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblqt
A collection of extensions to the Qt framework.
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblpybpod
Mostly a fork of the pybpod without the git submodule structure.
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/neuroenv
Repository meant to easily find compatible versions of useful python packages with heavy reliance on Github Actions CI
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/ibl-photometry
A collection of methods and tools for experimental photometry data
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/reveal
Tools to build reveal web-based presentations for scientific visualisations
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblutil
Small utilities with minimal dependencies
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/iblgovernance
IBL governance policies and documents
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/mesoscope
Code related to mesosocope experiments and analysis
Last synced: 08 Nov 2024
https://github.com/int-brain-lab/datajoint-ibl-gitops
DataJoint deployments for IBL's kubernetes cluster. Codebase for IBL Navigator located in: https://github.com/datajoint-company/ibl-navigator.
Last synced: 08 Nov 2024