https://github.com/mlin/sqlite_zstd_vfs

SQLite3 extension for read/write storage compression with Zstandard

compression-formats sqlite sqlite3 zstandard zstd

Last synced: 07 Apr 2025

https://github.com/mlin/GenomicSQLite

Genomics Extension for SQLite

bioinformatics genomics sequencing sqlite sqlite3

Last synced: 16 May 2025

https://github.com/mlin/genomicsqlite

Genomics Extension for SQLite

bioinformatics genomics sequencing sqlite sqlite3

Last synced: 05 Apr 2025

https://github.com/mlin/phylocsf

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

Last synced: 24 Apr 2025

https://github.com/mlin/spvcf

Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently

Last synced: 03 Sep 2025

https://github.com/mlin/sqlite_web_vfs

SQLite3 extension for read-only HTTP(S) database access

Last synced: 24 Apr 2025

https://github.com/mlin/gfabase

GFA insert into GenomicSQLite

Last synced: 24 Apr 2025

https://github.com/mlin/iitii

Implicit Interval Tree with Interpolation Index

Last synced: 24 Apr 2025

https://github.com/mlin/forkwork

OCaml library for forking child processes to perform work on multiple cores

Last synced: 24 Apr 2025

https://github.com/mlin/should.ml

Literate assertions for OCaml

Last synced: 24 Apr 2025

https://github.com/mlin/twt

The Whitespace Thing for OCaml

Last synced: 15 Jul 2025

https://github.com/mlin/node-assert-type

Concise runtime type assertions for Node.js

Last synced: 26 Oct 2025

https://mlin.github.io/ocaml-sqlite3EZ/

Thin wrapper for sqlite3-ocaml with a simplified interface

Last synced: 21 Nov 2025

https://github.com/mlin/gvcf_norm

gVCF allele normalizer

Last synced: 24 Apr 2025

https://github.com/mlin/ocaml-sqlite3ez

Thin wrapper for sqlite3-ocaml with a simplified interface

Last synced: 22 Jul 2025

https://github.com/mlin/blogging-my-genome

DNAnexus platform applets for analyzing my genome, and associated notes

Last synced: 29 Oct 2025

https://github.com/mlin/vcf_line_splitter

Split a huge VCF file into parts, quickly

Last synced: 14 Apr 2025

https://github.com/mlin/crf

OCaml library for semi-Markov conditional random fields

Last synced: 11 Aug 2025

https://github.com/mlin/ocaml-bgzf

OCaml library for BGZF, a gunzip-compatible format allowing random access to the uncompressed data

Last synced: 10 Sep 2025

https://github.com/mlin/glnext

Scalable gVCF merging and joint variant calling

Last synced: 25 Feb 2025

https://github.com/mlin/rocksworm

Access RocksDB databases over HTTPS for write-once/read-many use cases

Last synced: 15 May 2026

https://github.com/mlin/yajl-ocaml

OCaml bindings for the YAJL streaming JSON parser

Last synced: 13 Jul 2025

https://github.com/mlin/stakesign

Sign files via blockchain + put your money where your mouth is

Last synced: 26 Jul 2025

https://github.com/mlin/mlin-ocaml-genomics

Mike Lin's OCaml Genomics library

Last synced: 18 Apr 2026

https://github.com/mlin/yaxpo

Yet Another XML Parser for OCaml

Last synced: 14 Oct 2025

https://github.com/mlin/pfda2dockstore

Export precisionFDA apps to Dockstore

Last synced: 24 Apr 2025

https://github.com/mlin/20140411-dxjc-wgs-variant-calling

Presentation for DNAnexus journal club on Heng Li's WGS variant calling preprint

Last synced: 29 Jan 2026

https://github.com/mlin/genomicsqlite-examples

Last synced: 08 Oct 2025

https://github.com/mlin/rgenomicsqlite

[WIP / not yet ready] R bindings package for GenomicSQLite

Last synced: 29 May 2026

https://github.com/mlin/cloud-workstation

Bootstrapping scripts for cloud workstation with mosh and x2go

Last synced: 11 Aug 2025

https://github.com/mlin/iitj

Implicit Interval Trees (for Java)

Last synced: 26 Oct 2025

https://github.com/mlin/minimap2-scatter

WIP proof-of-concept

Last synced: 02 Mar 2026

https://github.com/mlin/narcissome-beacon

Back-end for

Last synced: 16 May 2026

https://github.com/mlin/mlin

Last synced: 03 Mar 2026

https://github.com/mlin/mlin.net_playbooks

Ansible playbooks for mlin.net

Last synced: 19 Nov 2025

https://github.com/mlin/rseqc

RNA-Seq Quality Control: Generates QC metrics for RNA-Seq data using the RSeQC suite; a graphical report of these metrics can be viewed on the DNAnexus website

Last synced: 24 Apr 2025

https://github.com/mlin/mlin.net

Mike Lin's Home Page

Last synced: 31 Jan 2026

https://github.com/mlin/ai4sqlite3

Natural language query assistant for SQLite databases

Last synced: 16 Jul 2025