Projects in Awesome Lists by refresh-bio
A curated list of projects in awesome lists by refresh-bio .
https://github.com/refresh-bio/vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
average-nucleotide-identity bacteriophages clustering dereplication genome-sequence sequence-similarity taxonomic-classification viruses
Last synced: 02 Apr 2026
https://github.com/refresh-bio/kmer-db
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
bioinformatics genomics indexing k-mer sequence-similarity
Last synced: 04 Apr 2026
https://github.com/refresh-bio/colord
A versatile compressor of third generation sequencing reads.
bioinformatics compression fastq-files genomics long-reads oxford-nanopore pac-bio sequencing
Last synced: 04 Apr 2026
https://github.com/refresh-bio/phist
Phage-Host Interaction Search Tool
bacterial-genomes bioinformatics genomics host-prediction k-mers phages
Last synced: 04 Apr 2026
https://github.com/refresh-bio/clusty
cd-hit clustering complete-linkage leiden set-cover single-linkage sparse-matrices uclust
Last synced: 04 Apr 2026