https://github.com/rnabioco/clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

assign-identities clusters marker-genes rna-seq single-cell-rna-seq

Last synced: 30 Oct 2025

https://github.com/rnabioco/valr

Genome Interval Arithmetic in R

bedtools genome interval-arithmetic

Last synced: 21 Oct 2025

https://github.com/rnabioco/sracha-rs

Rust-based sra-tools

fastq-dump fastq-files ncbi-sra sra

Last synced: 16 May 2026

https://github.com/rnabioco/molb-7950

MOLB 7950: Informatics and Statistics for Molecular Biology

Last synced: 06 Apr 2026

https://github.com/rnabioco/morrison-chronic-chikv-xenium

Quantification of CHIKV RNA at 28 dpi using spatial transcriptomics

Last synced: 14 Mar 2026

https://github.com/rnabioco/fcount-rs

Rust-based exon counting optimized for RNA-seq

featurecounts rna-seq

Last synced: 03 Apr 2026

https://github.com/rnabioco/squiggy-positron

Positron extension to visualize POD5 nanopore signals

api nanopore positron squiggle visualization

Last synced: 02 Apr 2026

https://github.com/rnabioco/aform-rs

TUI for Stockholm MSA viz/edit

msa rna-structure stockholm tui-rs

Last synced: 16 Apr 2026

https://github.com/rnabioco/clover

R package for analysis of nanopore tRNA sequencing data

bioconductor rna-seq trna-annotation

Last synced: 03 Apr 2026