Projects in Awesome Lists tagged with bedtools
A curated list of projects in awesome lists tagged with bedtools .
https://github.com/biowasm/biowasm
WebAssembly modules for genomics
awk bedtools bioinformatics bowtie2 genomics grep javascript jq minimap2 samtools sed seqtk webassembly
Last synced: 12 Apr 2025
https://github.com/rnabioco/valr
Genome Interval Arithmetic in R
bedtools genome interval-arithmetic
Last synced: 21 Oct 2025
https://github.com/deib-geco/pygmql
Python Library for data analysis based on GMQL
anaconda bedtools big-data binder bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-tool genomics gmql java jupyter-notebook pypi python scala
Last synced: 10 Apr 2025
https://github.com/shencangsheng/pg_bedtools_rs
A PostgreSQL plugin for bedtools, implemented in Rust.
bed bedtools pgrx plugin position postgresql rust
Last synced: 16 Feb 2026
https://github.com/sciencegenome/bedtools-pangenome-single-merge
rust bedtools single merge pangenome
bedtools bedtools-alignment bedtools-pangenome genome-alignment genome-analysis genome-analysis-annotation
Last synced: 18 Mar 2025
https://github.com/sciencegenome/bedtools-pangenome-multi-merge
rust bedtools pangenome merge
bedtools bedtools-alignment bioinformatics genome-alignment genome-analysis pangenome pangenome-alignment
Last synced: 18 Mar 2025
https://github.com/applicativesystem/rust-bedtools-pangenome
rust-bedtools but from the pangenome point of view.
algorithm bedtools bioinformatics bioinformatics-algorithms genome-annotation pangenome pangenome-analysis
Last synced: 24 Feb 2025
https://github.com/sebastian-gregoricchio/rseb
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
atac-seq bedtools chip-seq cutandtag daily-tasks data-visualisation data-visualization datamining deeptools genomics ngs qpcr qpcr-analysis r rna-seq statistics
Last synced: 31 May 2026
https://github.com/sciencegenome/bedtools-multipangenome
rust bedtools multi-pangenome call
algorithm-bioinformatics bedtools genome-analysis metagenomics pangenome pangenome-alignment rust-lang
Last synced: 20 Jun 2025
https://github.com/sciencegenome/bedtools-pangenome-intersect
rust pangenome bedtools intersect
bedtools bedtoolsintersect bioinformatics bioinformatics-data genome-analysis genome-sequencing pangenome pangenome-graph
Last synced: 01 Aug 2025