Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by stephenturner
A curated list of projects in awesome lists by stephenturner .
https://github.com/stephenturner/oneliners
Useful bash one-liners for bioinformatics.
Last synced: 31 Oct 2024
https://github.com/stephenturner/qqman
An R package for creating Q-Q and manhattan plots from GWAS results
Last synced: 31 Oct 2024
https://github.com/stephenturner/annotables
R data package for annotating/converting Gene IDs
Last synced: 31 Oct 2024
https://github.com/stephenturner/biorecap
Retrieve and summarize bioRxiv preprints with a local LLM using ollama
Last synced: 31 Oct 2024
https://github.com/stephenturner/kgp
1000 Genomes Project Metadata R Package
1000genomes bioinformatics genetics genomics metadata population-genetics sequencing
Last synced: 31 Oct 2024
https://github.com/stephenturner/msigdf
Molecular Signatures Database (MSigDB) in a data frame
Last synced: 31 Oct 2024
https://github.com/stephenturner/hcop
HGNC Comparison of Orthology Predictions (HCOP)
Last synced: 31 Oct 2024
https://github.com/stephenturner/mergelanes
Merge fastq files split over lanes
Last synced: 31 Oct 2024
https://github.com/stephenturner/devnotes
Random programming notes and orphan scripts
Last synced: 31 Oct 2024
https://github.com/stephenturner/workshops
Biological Data Science Workshops
Last synced: 31 Oct 2024
https://github.com/stephenturner/tverse
Meta package that installs my most commonly used packages
Last synced: 31 Oct 2024
https://github.com/stephenturner/alpinist
Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.
Last synced: 31 Oct 2024
https://github.com/stephenturner/slimbioinfo
Lightweight Alpine-based Docker images for common bioinformatics tools
Last synced: 31 Oct 2024
https://github.com/stephenturner/tmisc
Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data and biological sequence data.
Last synced: 31 Oct 2024
https://github.com/stephenturner/rmarkdown-crossreferences
Cross-reference figures and tables using plain RMarkdown
Last synced: 31 Oct 2024
https://github.com/stephenturner/string2dna
R package to encode/decode strings as nucleotide sequences
Last synced: 31 Oct 2024
https://github.com/stephenturner/rstudio-snippets
My custom RStudio snippets
Last synced: 31 Oct 2024
https://github.com/stephenturner/drawmydata
A webpage for teaching that lets you make a dataset by clicking in a blank scatterplot
Last synced: 31 Oct 2024
https://github.com/stephenturner/ggstephen
A ggplot2 extension providing a geom for adding Stephens
Last synced: 31 Oct 2024
https://github.com/stephenturner/duckpenguins
Demonstration of a Shiny app that queries a duckdb database holding the Palmer Penguins data. The app's code was generated with a simple prompt to ChatGPT.
Last synced: 31 Oct 2024
https://github.com/stephenturner/pipebox
Bioinformatics pipeline in a box (demonstration containerizing workflows with Docker)
Last synced: 31 Oct 2024
https://github.com/stephenturner/caffeinated
Provide statistics about your caffeine level specifically when you'd be going to bed.
Last synced: 31 Oct 2024