https://github.com/tskit-dev/msprime

Simulate genealogical trees and genomic sequence data using population genetic models

coalescent genetics genomics msprime python simulation trees tskit

Last synced: 26 Jan 2026

https://github.com/tskit-dev/tskit

Population-scale Ancestral Recombination Graph (ARG) library

bioinformatics genomics phylogenetics python science tree-sequences

Last synced: 06 Feb 2026

https://github.com/tskit-dev/pyslim

Tools for dealing with tree sequences coming to and from SLiM.

Last synced: 06 Mar 2026

https://github.com/tskit-dev/tsdate

Infer the age of ancestral nodes in a tree sequence.

Last synced: 22 Jan 2026

https://github.com/tskit-dev/tutorials

A set of tutorials for msprime and tskit.

Last synced: 22 Jan 2026

https://github.com/tskit-dev/tstrait

Quantitative trait simulation for ARGs

args tree-sequences tskit

Last synced: 22 Jan 2026

https://github.com/tskit-dev/tsconvert

Utilities for converting tree sequences to and from other formats

Last synced: 22 Jan 2026

https://github.com/tskit-dev/tszip

Gzip-like compression for tskit tree sequences

compression tree-sequence tskit

Last synced: 05 Mar 2026

https://github.com/tskit-dev/tsviz

Visualisation tools for tree sequences

Last synced: 22 Jan 2026

https://github.com/tskit-dev/sc2ts

ARG inference and analysis utilities for pandemic-scale SARS-CoV-2 data

args sars-cov-2 tskit

Last synced: 12 Mar 2026

https://github.com/tskit-dev/tsbrowse

Utilities for evaluating inferred tree sequences

Last synced: 22 Jan 2026

https://github.com/tskit-dev/tscompare

Utilities for comparing tree sequences

Last synced: 22 Jan 2026

https://github.com/tskit-dev/what-is-an-arg-paper

Manuscript and code for the "What is an ARG?" paper

Last synced: 22 Jan 2026

https://github.com/tskit-dev/kastore

The key-array store for read-only numerical data.

Last synced: 21 Oct 2025

https://github.com/tskit-dev/.github

Defaults for github shared across tskit-dev repositories

Last synced: 20 Feb 2026

https://github.com/tskit-dev/tskit-site

tskit website

Last synced: 22 Jan 2026

https://github.com/tskit-dev/genetic-relatedness-paper

Manuscript and files for the Genetic relatedness paper

Last synced: 22 Jan 2026