Projects in Awesome Lists tagged with cell-type-classification
A curated list of projects in awesome lists tagged with cell-type-classification .
https://github.com/nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
alternative-splicing bam-files bioinformatics-pipeline cell-cycle cell-type-classification clustering command-line-tool fastq-anaysis graphical-interface louvain-community-detection marker-gene-analysis network-analysis pagerank pathway-analysis python rna-seq-data scrna-seq-data single-cell-splicing splicing-quantification splicing-visualization
Last synced: 09 Apr 2026
https://github.com/ZJUFanLab/scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
annotation cell-type-classification deep-learning gnn graph-neural-network reference-free scrna-seq single-cell transcriptomics
Last synced: 21 Jul 2025
https://github.com/deweylab/cello
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
bioinformatics cell-biology cell-type cell-type-classification computational-biology machine-learning ontologies rna-seq single-cell-rna-seq
Last synced: 17 Jan 2026
https://github.com/biomed-ai/sango
The official implementation for "SANGO".
bioinformatics cell-type-annotation cell-type-classification cell-type-identification sequence single-cell supervised-classification-methods
Last synced: 16 Jan 2026
