Projects in Awesome Lists tagged with cellpose
A curated list of projects in awesome lists tagged with cellpose .
https://github.com/abailoni/cellpose-training-gui
Graphical tool for creating image segmentation annotations and training custom Cellpose models
annotation cellpose gui segmentation
Last synced: 05 Feb 2026
https://github.com/ajinkya-kulkarni/pyorganoidnet
This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1. Demo application available at https://segmentorganoids.streamlit.app/
cellpose deep-learning organoid-segmentation organoids stardist
Last synced: 28 May 2026
https://github.com/unikill066/xenium_cell_segmentation
End-to-end pipeline for spinal-cord microscopy segmentation with Cellpose, tiling, and mask stitching.
cell-segmentation cellpose cellpose-segmentation xenium
Last synced: 22 Jun 2025
https://github.com/buswinka/piefs
Python Instance (map) Eikonal Function Solver
cellpose distance-calculation eikonal eikonal-solver instance-segmentation omnipose pytorch
Last synced: 20 May 2026
https://github.com/cellsepi/cellsepi
Segmentation of microscopy images and data analysis pipeline with a graphical user interface, powered by Cellpose.
biology cell-biology cell-segmentation cellpose cellpose-segmentation cellsegmentation segmentation
Last synced: 02 Jun 2026
https://github.com/i30101/crystaleyes
CrystalEyes: a machine learning powered ice crystal analysis app
cellpose gui ice-crystals linkam machine-learning matplotlib microscope-images python pytorch tkinter ttk
Last synced: 15 May 2026
