Projects in Awesome Lists tagged with chromosomes
A curated list of projects in awesome lists tagged with chromosomes .
https://github.com/open2c/polychrom
Chromosome polymer simulations and in silico capture experiments
chromatin chromosomes hi-c loop-extrusion polymer simulation
Last synced: 24 Apr 2025
https://github.com/monarch-initiative/monochrom
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
chromosomes etl genomics linkml obofoundry owl
Last synced: 14 Feb 2025
https://github.com/lpryszcz/hicembler
Assembler for HiC data
a-really-rubish-designer aseembly chromosomes genome hi-c scaffolding
Last synced: 12 Feb 2025
https://github.com/egonw/wikipathways-chromosomes
Mapping WikiPathways to chromosomes
chromosomes javascript wikipathways
Last synced: 22 Nov 2024
https://github.com/pprattis/chimeric-alignment-problem
A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
bioinformatics chimeric-alignment chromosomes computer-science nucleotides program python sequence student
Last synced: 29 Mar 2025
https://github.com/christopher-hakkaart/genomefiles
Meta-chromosome genome files and scripts
centromere-regions chromosomes genome
Last synced: 03 Mar 2025
https://github.com/peteprattis/chromosome-last-nucleotide-game
A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.
arrays bioinformatics chromosomes computer-science fasta game loop nucleotides program python student
Last synced: 18 Jan 2025
https://github.com/pprattis/chromosome-last-random-nucleotide-game
A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.
arrays bioinformatics chromosomes computer-science fasta game loop nucleotides program python student
Last synced: 29 Mar 2025
https://github.com/pprattis/chromosome-last-nucleotide-game
A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.
arrays bioinformatics chromosomes computer-science fasta game loop nucleotides program python student
Last synced: 29 Mar 2025
https://github.com/peteprattis/chimeric-alignment-problem
A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
bioinformatics chimeric-alignment chromosomes computer-science nucleotides program python sequence student
Last synced: 18 Jan 2025
https://github.com/peteprattis/chromosome-last-random-nucleotide-game
A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.
arrays bioinformatics chromosomes computer-science fasta game loop nucleotides program python student
Last synced: 18 Jan 2025
https://github.com/peteprattis/sequence-global-alignment-with-unknown-nucleotides
A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.
bioinformatics chromosomes computer-science fasta global-alignment nucleotides program python sequence-alignment student
Last synced: 18 Jan 2025
https://github.com/pprattis/sequence-global-alignment-with-unknown-nucleotides
A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.
bioinformatics chromosomes computer-science fasta global-alignment nucleotides program python sequence-alignment student
Last synced: 29 Mar 2025