Projects in Awesome Lists tagged with differential-expression-analysis
A curated list of projects in awesome lists tagged with differential-expression-analysis .
https://github.com/fgcz/prolfqua
Differential Expression Analysis tool box R lang package for omics data
differential-expression-analysis hypothesis-testing protein-quantification proteomics-data-analysis quality-control r-package rstats-package
Last synced: 29 Oct 2025
https://github.com/epigen/dea_limma
A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.
atac-seq bioinformatics biomedical-data-science chip-seq differential-expression-analysis limma limma-trend limma-voom r rna-seq scrna-seq snakemake statistics visualization volcano-plot workflow
Last synced: 15 Apr 2025
https://github.com/epigen/dea_seurat
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
bioinformatics biomedical-data-science differential-expression-analysis scrna-seq single-cell snakemake snrna-seq visualization volcano-plot workflow
Last synced: 14 Jun 2025
https://github.com/pentalpha/r-peridot
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
bioconductor bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-tool differential-expression differential-expression-analysis gene-expression rna-seq-analysis rna-seq-pipeline
Last synced: 15 May 2026
https://github.com/euxhenh/grinch
A library for differential expression and gene set enrichment analysis based on hydra and pydantic.
clustering differential-expression-analysis gene-set-enrichment marker-genes single-cell single-cell-analysis
Last synced: 04 Apr 2026
https://github.com/sivkri/mirnaseq-de-analysis-qc
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
deseq2 deseq2-analysis differential-expression-analysis quality-control rna-seq rna-seq-analysis rna-seq-data rna-seq-pipeline visualization
Last synced: 22 Mar 2025
https://github.com/sebastiandha/depy
A hybrid Python-R proteomics DEA package
bioinformatics differential-expression-analysis metabolomics proteomics python r transcriptomics
Last synced: 16 May 2026
https://github.com/dominhduy09/maple
maple differential equation
differential-equations differential-expression-analysis maple maple-code maple-example maple-examples maple-programming-language
Last synced: 20 Jan 2026
https://github.com/eliasfarr/spot
SPOT - Swift Profiling Of Transcriptomes - a shiny app for gene ranking according to user-defined expression profiles
differential-expression-analysis easy-to-use expression fast gene-expression gene-expression-profiles gene-ranking shiny-apps transcriptomics
Last synced: 09 Jul 2025
https://github.com/insilicolife/micti
MICTI- Marker gene Identification for Cell Type Identity
differential-expression-analysis feature-extraction heterogeneous-cell-populations marker-genes
Last synced: 11 Mar 2026
